Detailed information on CNT3070208


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547627Quercus suberIpomoea triloba26.276.6388.0667forward
CNT30700605Quercus suberQuercus lobata93.7347.6194.14239forward
CNT30372997Quercus suberArabidopsis thaliana22.75891.3858reverse complement
CNT30617951Quercus suberSesamum indicum33.338.9985.8885reverse complement
CNT30406606Quercus suberBeta vulgaris34.5128.4888.6488reverse complement
CNT30526811Quercus suberPhaseolus vulgaris26.6722.1588.2468reverse complement
CNT30505537Quercus suberNicotiana attenuata28.2423.5388.8972reverse complement
CNT30158948Quercus suberPistacia vera43.9231.5584.82112forward
CNT30634223Quercus suberCapsicum annuum30.226.3785.7177forward
CNT3086893Quercus suberVigna radiata29.82589.4776reverse complement
CNT30235726Quercus suberBrassica oleracea25.8821.5789.3966reverse complement
CNT30172987Quercus suberTrifolium pratense27.062391.369reverse complement
CNT3061108Quercus suberArabidopsis lyrata21.9624.4592.8656forward
CNT3081558Quercus suberBrassica juncea29.419.368875forward
CNT3015356Quercus suberZea mays25.114.4589.0664forward
CNT30232760Quercus suberAnanas comosus22.3512.591.2357reverse complement
CNT30644693Quercus suberCannabis sativa32.9426.0190.4884reverse complement
CNT3029804Quercus suberTheobroma cacao31.7626.3891.3681reverse complement
CNT30319113Quercus suberAsparagus officinalis25.888.289.3966forward
CNT30120686Quercus suberCitrus clementina33.7328.5789.5386forward
CNT30334668Quercus suberCynara cardunculus32.5513.9785.5483reverse complement

Expression of CNT3070208

Peptides detected in this lncRNA

>peptide 1 (69 aa)
HRPDILPLLRARGLRCSVKPASRSTLYFRDHVIPTFAQITRSISQFGAGGLSSCTYRPCLVSRTIIPPL*

Sequence

>CNT3070208
CACCGACCCGATATCCTTCCACTGTTGAGAGCGAGAGGTCTTCGCTGCTCTGTGAAACCAGCCTCACGCAGTACCCTCTACTTTAGGGACCATGTGATCC
CGACCTTCGCCCAAATCACAAGGTCCATCTCTCAATTTGGAGCGGGCGGGCTAAGTAGTTGCACATACAGACCCTGCCTGGTGAGCCGAACCATTATCCC
ACCACTTTGATGCCCCTGCACAGGTTACAAGTTAGCGCTACCCAACTCGGCAAGG