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Detailed information on CNT30720416


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671994Triticum speltaSetaria viridis34.6132.6587.02208forward
CNT30520532Triticum speltaSetaria italica35.1125.2787.2211forward
CNT30640440Triticum speltaNymphaea colorata27.4524.787.27165forward
CNT30513316Triticum speltaJuglans regia20.1318.6783.47121forward
CNT30179479Triticum speltaSecale cereale53.0846.192.16319forward
CNT30287394Triticum speltaTriticum aestivum49.4235.48100297forward
CNT30221194Triticum speltaHordeum vulgare72.5584.590.14436forward
CNT30387400Triticum speltaTriticum turgidum53.0863.5596.55319forward
CNT30562752Triticum speltaActinidia chinensis27.2912.9682.32164forward
CNT30436081Triticum speltaAegilops tauschii45.0953.0396.68271forward
CNT30244040Triticum speltaAvena sativa42.132.7394.86253forward
CNT30659169Triticum speltaTriticum dicoccoides56.2443.4496.45338forward
CNT30452520Triticum speltaSaccharum spontaneum34.7813.9487.08209forward
CNT30132672Triticum speltaLolium perenne34.9437.6394.29210forward
CNT30229673Triticum speltaAnanas comosus33.7829.2984.24203forward
CNT30680283Triticum speltaTriticum urartu49.0851.0499.66295forward
CNT30340460Triticum speltaEragrostis tef33.7823.8886.7203forward
CNT30596550Triticum speltaOryza meridionalis36.2726.8588.07218forward
CNT30370789Triticum speltaOryza glumipatula26.1211.4189.81157forward
CNT30148661Triticum speltaBrachypodium distachyon34.2844.2192.23206forward
CNT30581232Triticum speltaEchinochloa crusgalli24.4620.6285.03147forward
CNT30116951Triticum speltaOryza nivara36.2714.7488.07218forward
CNT30556732Triticum speltaPanicum hallii24.4618.8587.07147forward

Expression of CNT30720416

SRR9114152: 184.76 RPKM

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVVCSGSLRWVGVDLTSASSNRVPMISPARFWARFWSRESTSYCRYSAGFPRPKGSKP*

Sequence

>CNT30720416
GTGATTGCACTTGCGTGGATGCTATCTTTGTAATCGAAAAAACGAAACAAAAGATGAGCTCAAGATTGATGTACAAGTGGATGCATTAAGTCACCATTGG
TTCATATTTTACAAATCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTACTCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTC
GTCATATACAAAACGAAAAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGCAGCCGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAG
GAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGGGGTGGACTTGACGTCGGCGTCCTCGAACCGGGTGCCGATGATCTCGC
CCGCCAGGTTCTGGGCCAGGTTCTGGTCCAGGGAGTCCACGTCGTACTGCAGGTACTCCGCGGGCTTCCCGAGGCCGAAGGGGTCGAAGCCGTAGTCGCC
GACGAGCGTGCCGTCGAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGGCGCCTTGGCCTTCTTCGGCGGGGCCTTC
T