Detailed information on CNT30513316


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Juglans regiaSetaria viridis19.2921.2284.8125forward
CNT30382112Juglans regiaManihot esculenta18.3622.5882.35119forward
CNT30244696Juglans regiaAvena sativa16.9820.8783.64110forward
CNT30132672Juglans regiaLolium perenne18.6721.6882.64121forward
CNT30720416Juglans regiaTriticum spelta18.6720.1383.47121forward
CNT30148661Juglans regiaBrachypodium distachyon18.6725.9783.47121forward
CNT30112169Juglans regiaFicus carica21.918.4784.51142forward

Expression of CNT30513316

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVVWRGSLKWVAQLLRGPFPVTAAWTAKPRKPTMARPRIGCRSRRRPNS*

>peptide 2 (41 aa)
ISNMLLSLVIVIHIFTRKVQTINQPSKMLVINQRNYREKGA*

>peptide 3 (67 aa)
MGCPVVERAFSGDGSLDGKAKEANHGEASNRVPITSPAKFLARFWSNESKSNCKYSAGLPSPNGSKP*

Sequence

>CNT30513316
CAATTTCAAACATGCTGCTTAGCCTAGTAATTGTCATACATATTTTTACAAGGAAAGTACAGACTATAAATCAGCCAAGTAAAATGCTGGTGATAAACCA
AAGGAATTACAGAGAGAAAGGTGCTTGATTAAGAGGTGAAGGCGTCAATAATGGTGGTGTGGAGAGGGTCACTCAAATGGGTTGCCCAGTTGTTGAGAGG
GCCTTTTCCGGTGACGGCAGCTTGGACGGCAAAGCCAAGGAAGCCAACCATGGCGAGGCCTCGAATCGGGTGCCGATCACGTCGCCGGCCAAATTCTTAG
CCAGGTTCTGGTCCAACGAGTCCAAGTCGAACTGCAAGTACTCGGCGGGCTTGCCCAGTCCGAACGGGTCGAAACCGTAATCACCAACCAAGCTCCCGTC
CAGCCATTCCGGAGCTTTGGCTCCCGGATACCAGAGAGGACGATCGGTGGTGGGCTTTACCGATTTCTTGGGCGGGCTTTTCTTACCTCCGAATCCAAAT
CGGGCTTGGAATCTGCCGGAGTTGGAGTAAACTTCTGGCAGACGTGTTCCAATGAAGGAGGAAGTAGCAGCAGCAGTGGTTGCAGCCATGGCGATGGGGC
TGAAGAGTGGCAGGAGGTTCGAGAATGGGTGATTTTAATTGTTGAAAC