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Detailed information on CNT30596550


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520532Oryza meridionalisSetaria italica30.329.4690.65246forward
CNT30708177Oryza meridionalisGlycine max22.0417.0283.8179forward
CNT30290078Oryza meridionalisTriticum aestivum31.0332.9889.29252forward
CNT30562752Oryza meridionalisActinidia chinensis21.6713.9184.09176forward
CNT30244040Oryza meridionalisAvena sativa31.0332.688.49252forward
CNT30659169Oryza meridionalisTriticum dicoccoides19.9520.8289.51162forward
CNT30261767Oryza meridionalisBrassica rapa13.4240.8282.57109forward
CNT30452520Oryza meridionalisSaccharum spontaneum30.316.4189.43246forward
CNT30229673Oryza meridionalisAnanas comosus30.335.586.59246forward
CNT30720416Oryza meridionalisTriticum spelta26.8536.2788.07218forward
CNT30148661Oryza meridionalisBrachypodium distachyon26.7246.5786.18217forward
CNT30581232Oryza meridionalisEchinochloa crusgalli21.4324.490.8174forward
CNT30556732Oryza meridionalisPanicum hallii21.6722.5692.05176forward

Expression of CNT30596550

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVVWSGSLRGPLPVAAACTAKPRKRWRPNTSV*

>peptide 2 (34 aa)
MTSPLSIPSQLARHHKTKPRARTHTNARKRIDPV*

>peptide 3 (35 aa)
SIDVQVDALIHHRVFIYYKSPPCKSPLTTNPALLI*

>peptide 4 (58 aa)
DRCTSGCINSSSGVHILQITTMQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 5 (34 aa)
MISPALFLARFWSSESSSNCRYSAGFPRPNGSKP*

Sequence

>CNT30596550
TCGATCGATGTACAAGTGGATGCATTAATTCATCATCGGGTGTTCATATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCC
TAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACAC
CAACGCACGCAAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGC
TGAGGGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGCGCTGGAGGCCGAACACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCAC
CTCGCCGGTCTCGAACCGGGTGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCGCCGGC
TTCCCGAGGCCGAACGGGTCGAAGCCGTAGTCGCCGACGAGCGACCCGTCCAGGTAGTCCGGCGCCACCGCGCCGGGGAACCACAGCGGCCTGTCCGTCG
TCGGCGCCGACGACCTCGCCGCCTTCTTCGCCGCCGCCTTCTTCCCGCCGCCGAACCCGAACCTCGCCACGATCCTCCCGCTCTGCGGCGCCGGGTCCGC
CAGCCTCGTCCCCAGGAACGTGCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGCTCTTCTCCTCCTTCTTCTTCTTCTTCGAGAATGTGTGGGTGGT
GGTGAGGGGGGG