Detailed information on CNT30229673


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640440Ananas comosusNymphaea colorata25.9726.9586.67180forward
CNT30659169Ananas comosusTriticum dicoccoides22.0819.6785.62153forward
CNT30720416Ananas comosusTriticum spelta29.2933.7884.24203forward
CNT30596550Ananas comosusOryza meridionalis35.530.386.59246forward
CNT30148661Ananas comosusBrachypodium distachyon31.4646.7882.11218forward
CNT30581232Ananas comosusEchinochloa crusgalli25.1124.486.78174forward
CNT30556732Ananas comosusPanicum hallii25.422.5685.23176forward
CNT30112169Ananas comosusFicus carica20.28.3582.86140forward

Expression of CNT30229673

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTSPAEFLAKFWSSESSSNCKYSAGLPRPKGSKP*

>peptide 2 (34 aa)
MTSPAEFLAKFWSSESSSNCKYSAGLPRPKGSKP*

>peptide 3 (99 aa)
AAVDELALAEALQAEDLAVGLEGRGLDVGGLGTRADDVAGRVLGQILVQRIQLELQVLGRLAQAEGVEAVVADQRAVQPLRRLRARVPQRPRCRPKTSL*

Sequence

>CNT30229673
GCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTGCAGGCCGAAGACCTCGCTGTAGGGCTGGAAGGGCGTGGACTTGACGTCGGCGGTCTCGGAACGC
GTGCCGATGACGTCGCCGGCCGAGTTCTTGGCCAAATTCTGGTCCAGCGAATCCAGCTCGAACTGCAAGTACTCGGCCGGCTTGCCCAGGCCGAAGGGGT
CGAAGCCGTAGTCGCCGACCAGCGAGCCGTCCAGCCACTCCGGCGCCTTCGCGCCCGGGTACCACAGCGGCCGCGCTGCAGGCCGAAGACCTCGCTGTAG
GGCTGGAAGGGCGTCGACTTGACGTCGGCGGTCTCGGAACGCGTGCCGATGACGTCGCCGGCCGAGTTCTTGGCCAAATTCTGGTCCAGCGAATCCAGCT
CGAACTGCAAGTACTCGGCCGGCTTGCCCAGGCCGAAGGGGTCGAAGCCGTAGTCGCCGACCAGCGAGCCGTCCAGCCACTCCGGCGCCTTCGCGCCCGG
GTACCACAGCGGCCGGTCCGTGCCCCCCGACGTGGCTTTCTTTTTCGGGGCCGATTTCTTCTTTCCGAACCCGAACCGCGCCGCGAACCGGCCCCGGGTC
TGAACCGGCTCCGCGAGCCGGGTTCCCAGGAACGGCGAGGCTGATGCGGCGGAGGCCATGTTATTATGCTTCGCTCGGCTTCACCCCAACCCC