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Detailed information on CNT30132672


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 6e-68

BLAST vs NONCODE:
NONBRAT002959, E-value = 1e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Lolium perenneSetaria viridis54.4851.6187.5304forward
CNT30520532Lolium perenneSetaria italica59.864087.72334forward
CNT30640553Lolium perenneNymphaea colorata29.9320.7587.43167forward
CNT30513316Lolium perenneJuglans regia21.6818.6782.64121forward
CNT30526451Lolium perennePhaseolus vulgaris21.8611.5195.9122forward
CNT30708158Lolium perenneGlycine max42.8328.8383.68239forward
CNT30290078Lolium perenneTriticum aestivum52.5138.3593.52293forward
CNT30221568Lolium perenneHordeum vulgare59.8631.994.31334forward
CNT30562752Lolium perenneActinidia chinensis59.526.2580.12332forward
CNT30236263Lolium perenneBrassica oleracea22.425.7280.8125forward
CNT30554380Lolium perenneOryza glaberrima35.4817.9289.39198forward
CNT30244040Lolium perenneAvena sativa54.1239.0793.38302forward
CNT30262014Lolium perenneBrassica rapa36.7444.6679.02205forward
CNT30452520Lolium perenneSaccharum spontaneum59.6822.2188.29333forward
CNT30229721Lolium perenneAnanas comosus59.6814.1885.59333forward
CNT30720416Lolium perenneTriticum spelta37.6334.9494.29210forward
CNT30340460Lolium perenneEragrostis tef58.4238.3588.34326forward
CNT30596509Lolium perenneOryza meridionalis40.514.8788.94226forward
CNT30370789Lolium perenneOryza glumipatula50.3620.4289.68281forward
CNT30328621Lolium perenneAsparagus officinalis16.1330.29090forward
CNT30120621Lolium perenneCitrus clementina14.8721.3485.5483forward
CNT30148661Lolium perenneBrachypodium distachyon39.0746.7891.28218forward
CNT30581381Lolium perenneEchinochloa crusgalli29.0358.2790.74162forward
CNT30496270Lolium perenneDigitaria exilis37.4621.1888.04209forward
CNT30116923Lolium perenneOryza nivara52.6935.3488.44294forward
CNT30556732Lolium perennePanicum hallii31.5422.5685.23176forward

Expression of CNT30132672

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSASSNRVPMTSPARFWARFWSRESGSYCRYSAGFPRPKGSNP*

>peptide 2 (75 aa)
TSGCIRSPLVHILQISKSQQLSYVIRPALINKGSFAVLSLIARHTKRNHVLTRTRSSIFAAELTEAYTLLDDRDR*

>peptide 3 (89 aa)
MDELALAEPLEAEHLVVGLERGGLDVGVLEPGADDLPGQVLGKVLVQGVRVVLQVLGRLPEAEGVEPVVADERAVEVLGRLRAGEPQRPV

Sequence

>CNT30132672
TACAAGTGGATGCATTAGGTCACCATTGGTTCATATTTTACAAATCTCCAAGTCCCAGCAGCTGTCCTATGTAATCAGACCTGCATTAATCAACAAAGGA
TCTTTTGCGGTACTCTCTCTCATCGCTCGTCACACAAAACGAAACCACGTTCTTACAAGGACGCGTTCGTCCATTTTTGCAGCCGAGCTGACAGAAGCGT
ATACACTGCTCGACGACCGAGACCGGTGACACCGGTGAGCCACTCGACGGTGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCATGGATGAGCTCG
CACTCGCGGAACCTCTGGAGGCCGAACACCTCGTTGTAGGGCTGGAAAGGGGTGGCCTTGATGTCGGCGTCCTCGAACCGGGTGCCGATGACCTCCCCGG
CCAGGTTCTGGGCAAGGTTCTGGTCCAGGGAGTCCGGGTCGTACTGCAGGTACTCGGCCGGCTTCCCGAGGCCGAAGGGGTCGAACCCGTAGTCGCCGAT
GAGCGTGCCGTCGAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCG