Detailed information on CNT30640440


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671994Nymphaea colorataSetaria viridis23.824.9685.53159forward
CNT30500595Nymphaea colorataCoffea canephora20.6618.1382.61138forward
CNT30287394Nymphaea colorataTriticum aestivum57.0445.5285.04381forward
CNT30229673Nymphaea colorataAnanas comosus26.9525.9786.67180forward
CNT30720416Nymphaea colorataTriticum spelta24.727.4587.27165forward
CNT30116923Nymphaea colorataOryza nivara24.2519.4786.42162forward
CNT30556732Nymphaea colorataPanicum hallii23.520.1384.71157forward

Expression of CNT30640440

Peptides detected in this lncRNA

>peptide 1 (55 aa)
VQVQLGGNEGRLGRRGKGVEDGGVERIAQVGGPVVERALAGGSCLDGEAQEPDHC*

>peptide 2 (71 aa)
MVVWRGSLKWVAQLLRGPLPVAAAWTAKPRNPIIASRACLISASCSWLFFSGSDASPSGSKGPPGAGRGWT*

>peptide 3 (34 aa)
MMSPAGFLARFWSRESSSNCRYSAGLPRPKGSKP*

>peptide 4 (34 aa)
TSSTRGKRRASRKKRKRCRRWWCGEDRSSGWPSC*

Sequence

>CNT30640440
GTACAAGTTCAACTCGGGGGAAACGAAGGGCGTCTAGGAAGAAGAGGAAAAGGTGTCGAAGATGGTGGTGTGGAGAGGATCGCTCAAGTGGGTGGCCCAG
TTGTTGAGAGGGCCCTTGCCGGTGGCAGCTGCCTGGACGGCGAAGCCCAGGAACCCGATCATTGCTAGCCGGGCGTGCTTGATCTCCGCCAGCTGCAGCT
GGCTCTTCTTCTCCGGGTCGGACGCCAGCCCCAGTGGGTCGAAGGGGCCGCCAGGGGCTGGAAGGGGGTGGACTTGACGTCCGAGCTCTCGAACCTGGTG
CCGATGATGTCACCCGCTGGGTTCTTGGCCAGGTTCTGGTCCAGGGAGTCGAGCTCGAACTGCAGGTACTCGGCAGGCTTGCCCAGGCCGAAGGGATCGA
AGCCGTAGTCGCCGACAAGAGTGCCGTCCAGCCATTCGGGGGCCTTGGCTCCAGGGAACCAGAGGGGCCTGTCCGACACCACCCTTTTGGGCGACGACTT
CTTCACCGTCTTCTTCCCGCCACCGAACCCGAACCTTGCCTGGAACCTGCCGCCGTTGGCGTTGTGGACGTGGCTCCGGTGGTAGCAGCGGCCATTCTCC
CCGTTCACTCTCTGAATTGTTTCTCGATGAGAGTGAGAGGGCGTCGTGATGATGCGATGAGGCTTTTC