CANTATAdb - search

Detailed information on CNT30221194

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30436081	Hordeum vulgare	Aegilops tauschii	47.09	47.55	95.88	243	forward
CNT30720416	Hordeum vulgare	Triticum spelta	78.29	67.22	90.59	404	forward

Expression of CNT30221194

Peptides detected in this lncRNA

>peptide 1 (42 aa)
GCRLCNRKKQTKNQLKIDVQVDALSHHWFIFYKSPSPSSSPM*

>peptide 2 (70 aa)
MVGWNGVDLTSASSNRVPMISPARFCARFWSRESTSYCRYSGACAPGNHSGRSVVGGALAFFGGAFFLPKP

Sequence

>CNT30221194
GGATGTCGTCTTTGTAATCGCAAAAAACAAACAAAAAATCAGCTCAAGATTGATGTACAAGTGGATGCATTGAGTCACCATTGGTTCATATTTTACAAAT
CACCAAGTCCCAGCAGCTCTCCTATGTGATCGGACCAGCATTATAATCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCA
AAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAACTGCTCGACCACCGACCACTTAAGAGGAGCCGAAGGTGTCGAA
GATGGTGGGCTGGAACGGGGTGGACTTGACGTCGGCGTCCTCGAACCGGGTGCCGATGATCTCACCCGCCAGGTTCTGTGCAAGGTTCTGGTCCAGGGAG
TCCACGTCGTACTGCAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGGCGCCTTGGCCTTCTTCGGCGGGGCCTTCT
TCTTGCCGAAGCCGAA