« Back to Brachypodium distachyon search


Detailed information on CNT30148661


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671994Brachypodium distachyonSetaria viridis46.7834.2286.7218forward
CNT30520532Brachypodium distachyonSetaria italica46.7826.1186.7218forward
CNT30513316Brachypodium distachyonJuglans regia25.9718.6783.47121forward
CNT30290078Brachypodium distachyonTriticum aestivum46.7828.5391.74218forward
CNT30221568Brachypodium distachyonHordeum vulgare46.7820.8290.37218forward
CNT30562752Brachypodium distachyonActinidia chinensis40.5614.9483.6189forward
CNT30244040Brachypodium distachyonAvena sativa46.7828.292.66218forward
CNT30659169Brachypodium distachyonTriticum dicoccoides32.6219.5491.45152forward
CNT30132672Brachypodium distachyonLolium perenne46.7839.0791.28218forward
CNT30229673Brachypodium distachyonAnanas comosus46.7831.4682.11218forward
CNT30720416Brachypodium distachyonTriticum spelta44.2134.2892.23206forward
CNT30340460Brachypodium distachyonEragrostis tef46.1425.2989.3215forward
CNT30596550Brachypodium distachyonOryza meridionalis46.5726.7286.18217forward
CNT30116923Brachypodium distachyonOryza nivara46.5726.0886.18217forward
CNT30556732Brachypodium distachyonPanicum hallii34.1220.3886.79159forward
CNT30112169Brachypodium distachyonFicus carica30.478.4783.1142forward

Expression of CNT30148661

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSASSNRVPMTSPARFWARFWSSESGSYCRYSAGFPSPNGSNP*

Sequence

>CNT30148661
GATGCATTAATTCACCGTTGGTTTCATATATTACACAAATCACCAAAGTCATCCCAGCAGCTCTCCTAAGTAACCAGACCTGCGTTTAACCAACAAAGTA
TCGTCCATCTTCGTGCCCTCTCACCGCTCATCACAAAACTAAACCAGCCACACGTTCGTTCGTAGTACACGAACTCGTCGGTCCATTTCGCAGCTGAGCT
GACAGAAAAAACGTGTACACTGTTGAAACGACCCATAGGACTAGGGCTGGAGAGGGGTGGACTTGATGTCGGCGTCCTCGAACCGGGTGCCGATGACCTC
GCCCGCAAGGTTCTGGGCCAGGTTCTGGTCCAGCGAGTCCGGGTCGTACTGTAGGTACTCCGCGGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCG
CCCACCAGCGTCCCGTCCAGGTACTCGGGCGCCTGCGCCCCCGGGAACCACAGCGGCCGATCCGTC