« Back to Oryza glumipatula search


Detailed information on CNT30370789


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 7e-44

BLAST vs NONCODE:
NONBRAT002959, E-value = 5e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Oryza glumipatulaSetaria viridis20.9348.993.06288forward
CNT30520322Oryza glumipatulaSetaria italica22.4627.5293.2309forward
CNT30640553Oryza glumipatulaNymphaea colorata15.4826.4687.32213forward
CNT30375654Oryza glumipatulaArabidopsis thaliana9.7427.6982.09134forward
CNT30708158Oryza glumipatulaGlycine max19.2631.9784.15265forward
CNT30290078Oryza glumipatulaTriticum aestivum17.9532.3391.09247forward
CNT30221568Oryza glumipatulaHordeum vulgare21.9528.8491.39302forward
CNT30562752Oryza glumipatulaActinidia chinensis21.4423.3283.05295forward
CNT30236263Oryza glumipatulaBrassica oleracea11.3432.182.69156forward
CNT30244040Oryza glumipatulaAvena sativa18.633.1290.62256forward
CNT30659570Oryza glumipatulaTriticum dicoccoides16.2140.6989.69223forward
CNT30261767Oryza glumipatulaBrassica rapa7.9240.8282.57109forward
CNT30452520Oryza glumipatulaSaccharum spontaneum22.5320.6892.26310forward
CNT30132672Oryza glumipatulaLolium perenne20.4250.3689.68281forward
CNT3042238Oryza glumipatulaChlamydomonas reinhardtii5.1622.4788.7371forward
CNT30229721Oryza glumipatulaAnanas comosus22.613.2589.71311forward
CNT30680980Oryza glumipatulaTriticum urartu19.9952.4890.18275forward
CNT30720416Oryza glumipatulaTriticum spelta11.4126.1289.81157forward
CNT30340460Oryza glumipatulaEragrostis tef22.8236.9492.36314forward
CNT30596514Oryza glumipatulaOryza meridionalis53.4246.0894.56735forward
CNT30105722Oryza glumipatulaOryza longistaminata7.737.4693.4106forward
CNT30328621Oryza glumipatulaAsparagus officinalis10.2547.3286.52141forward
CNT30147796Oryza glumipatulaBrachypodium distachyon10.135.0194.96139forward
CNT30577064Oryza glumipatulaOryza barthii29.5853.2799.26407forward
CNT30496270Oryza glumipatulaDigitaria exilis16.7223.390.87230forward
CNT30116951Oryza glumipatulaOryza nivara76.7471.497.351056forward
CNT30604335Oryza glumipatulaOryza punctata23.9855.0986.67330forward
CNT30556732Oryza glumipatulaPanicum hallii12.7922.5692.05176forward

Expression of CNT30370789

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MQCACVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 2 (55 aa)
MLVVMYGGVSCTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNTSV*

>peptide 3 (29 aa)
MTSTSIQISVEIENGSGCPRYDDPSTSST*

>peptide 4 (34 aa)
MISPALFLARFWSSESSSNCRYSAGFPRPNGSKP*

>peptide 5 (34 aa)
MVVWSGSLRRACLISASCSRSFFSGSDANPSGSK*

>peptide 6 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 7 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

Sequence

>CNT30370789
TTATTTATAACTAATTATTTTTTTCAGTGATAAACAATATACCTATTGATAGCGAGACACCTGTTATAACTTTGTTAATATCAATACAAGTCAGGTAAAG
TGTATGCAGTGTGCATGTGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGATCGATGTACAAGTGGATGCATTAATTCATCATCTT
GGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCC
TCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAG
CTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTC
TTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGT
AGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGTACGACGACCCATCCACCAGCTCCACCTGAAAAAC
ACCATCGGACCATTCCTACGTCAGTGTCATCGTCCTCGTCTGCGGCGCCGGCGACACGTAGTAACCAGGGTTTTAAATCTTCAGCTATAGCTATTTGAAA
AAAGGTGTAGCAATTTGTTCTCATGTATAATTTAGTCATAGCTGCCACTATTTTGAGAGGCTAAACGCTAAATGTTTTAGCCCGCTAGCTATTTGAAACA
ATGGTAGTGAGAAACGCCCAGAGGTTTTTCGGCTATCCCCACAGGCTAGACGACCTGAGTTTGAAGCCTTACTCTTTCTAATTATTTGATATATTAGGTC
ATTTTTTAATATTTGCTTTTTTTAAAAAAAAATGCTGGTAGTAATGTATGGGGGAGTATCGTGTACCTTGCCGGCGTCTTGCCAGGTGACGCCGGTGAGC
CACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTGGAGGCCGAACACCTCGGTGTAGG
GCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCGAACCGGGTGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTC
GAACTGCAGGTACTCCGCCGGCTTCCCGAGGCCGAACGGGTCGAAGCCGTAGTCGCCGACGAGCGACCCGTCCAGG