Detailed information on CNT30581232


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671994Echinochloa crusgalliSetaria viridis24.427.3294.25174forward
CNT30520223Echinochloa crusgalliSetaria italica52.3145.6593.3373forward
CNT30562752Echinochloa crusgalliActinidia chinensis23.8413.4485.88170forward
CNT30229673Echinochloa crusgalliAnanas comosus24.425.1186.78174forward
CNT30720416Echinochloa crusgalliTriticum spelta20.6224.4685.03147forward
CNT30596550Echinochloa crusgalliOryza meridionalis24.421.4390.8174forward
CNT30116923Echinochloa crusgalliOryza nivara24.420.9190.8174forward
CNT30556732Echinochloa crusgalliPanicum hallii51.4747.0594.55367forward

Expression of CNT30581232

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MRPFCGAGSASRVPRNVLAAAATDEAMAADEYSTPRCSLGPVVVCVAGRRRG

>peptide 2 (35 aa)
MCSPRRPPTKPWLLMSTLLLGVLWVRWWCVWRGDGG

>peptide 3 (61 aa)
QDDRCTSECIDSSLVHILQMTKSQALLINATSINKGLDRIHHLPIPSHSSSQNDTVPSISS*

>peptide 4 (34 aa)
MMPPASFLARFWSSESSSNCRYSAGLPRPHGSNP*

>peptide 5 (33 aa)
MDIWAGLKRILRRPRCRAGTGWISPRRTRSGCR*

Sequence

>CNT30581232
CAAGACGATAGATGTACAAGTGAATGCATTGATTCATCACTGGTTCATATATTACAAATGACCAAGTCCCAAGCTCTCCTAATTAACGCGACCTCCATTA
ACAAAGGACTAGATCGGATCCACCATCTTCCCATACCCTCTCACTCGTCATCACAAAATGATACAGTACCATCCATCTCCAGCTGATGATAGAGATCACG
GTTAATTAATTCAAGAACATCACGTTTCGGACGTACGGATCGACGCATGGATATATGGGCCGGGCTTAAGAGGATCCTCCGAAGACCTCGCTGTAGGGCT
GGAACGGGGTGGATTTCACCTCGGCGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAA
CTGCAGGTACTCCGCGGGCTTGCCCAGGCCCCACGGGTCGAACCCGTAGTCGGGCGCCACCGCGCCGGGGAACCACAGCGGCCGGTCGGAGCTCGTCGAC
GACTTGGCCGCCTTCTTCGGGGCGGCCGGCTTCTTGCCGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTGCCCA
GGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGATGAGTACTCTACTCCTCGGTGTTCTTTGGGTCCGGTGGTGGTGTGTGTGGCGGG
GAGACGGAGGGGG