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Detailed information on CNT30520532


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 1e-54

BLAST vs NONCODE:
NONBRAT002959, E-value = 1e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179479Setaria italicaSecale cereale29.8235.9884.74249forward
CNT30290078Setaria italicaTriticum aestivum54.4959.5586.59455forward
CNT30244040Setaria italicaAvena sativa67.973.3584.83567forward
CNT30659169Setaria italicaTriticum dicoccoides37.8440.6285.76316forward
CNT30262014Setaria italicaBrassica rapa15.4528.182.95129forward
CNT30132672Setaria italicaLolium perenne4059.8687.72334forward
CNT30720416Setaria italicaTriticum spelta25.2735.1187.2211forward
CNT30596550Setaria italicaOryza meridionalis49.8251.2386.78416forward
CNT30328621Setaria italicaAsparagus officinalis13.2937.2588.29111forward
CNT30148661Setaria italicaBrachypodium distachyon26.1146.7886.7218forward
CNT30116923Setaria italicaOryza nivara35.2135.3492.18294forward

Expression of CNT30520532

Peptides detected in this lncRNA

>peptide 1 (45 aa)
ECINSSLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 2 (31 aa)
MDDGAMATMARRACLISASCSRSFFSGSAAR*

>peptide 3 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

>peptide 4 (37 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPPPPPGCA

Sequence

>CNT30520532
GTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTATCGGA
TCGATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAATTAAT
TCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGG
GTCGGCCGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAAC
GCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGC
CAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCACGGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCG
AGGTAGTCGGGCGCCACCGCGCCGGGGAACCAGAGCGGCCGGTCGGAGACCGACGACGTCTTGGCCGCCTTCTTCGGGGCGGCGGTCTTCTTGCCGCCGC
CGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCTGGGTCCGCCAGGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCAT
GGCTGCTGCTCCTCCTCCTCCTCCTGGGTGTGCTG