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Detailed information on CNT30244040


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Avena sativaSetaria viridis35.1946.1889.34272forward
CNT30520532Avena sativaSetaria italica73.3567.984.83567forward
CNT30708157Avena sativaGlycine max34.2829.5184.15265forward
CNT30290078Avena sativaTriticum aestivum62.7463.4894.64485forward
CNT30221568Avena sativaHordeum vulgare39.0728.8496.69302forward
CNT30554380Avena sativaOryza glaberrima21.4715.0291.57166forward
CNT30659169Avena sativaTriticum dicoccoides45.0244.7392.82348forward
CNT30132672Avena sativaLolium perenne39.0754.1293.38302forward
CNT30720416Avena sativaTriticum spelta32.7342.194.86253forward
CNT30340460Avena sativaEragrostis tef38.1634.7189.83295forward
CNT30596550Avena sativaOryza meridionalis52.1349.6385.36403forward
CNT30370789Avena sativaOryza glumipatula33.1218.690.62256forward
CNT30148661Avena sativaBrachypodium distachyon28.246.7892.66218forward
CNT30116923Avena sativaOryza nivara37.6534.9890.38291forward
CNT30556732Avena sativaPanicum hallii22.7722.5688.07176forward
CNT30112169Avena sativaFicus carica30.2713.9579.49234forward

Expression of CNT30244040

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVVCSGSLRKATMARRACLISASCRVSFFSGSAARPSGSK*

>peptide 2 (34 aa)
HSSYKTKPRSYTDYAFVHLAAELTEPYTLLDDRD*

>peptide 3 (42 aa)
MRPFCGAGSARRVPRNELAAAATDEAMAILTPACPPRPLRGFV

>peptide 4 (40 aa)
TRHTKPNHVRTRTTRSSILQPSLQNRIHCSTTETSDRPRA*

>peptide 5 (56 aa)
SLVIQNQTTFVHGLRVRPSCSRAYRTVYTARRPRLATDRALKRSPRCRRWWCAAGR*

>peptide 6 (34 aa)
MISPARFWARFWSRESTSYCRYSAGFPRPKGSNP*

Sequence

>CNT30244040
TCACTCGTCATACAAAACCAAACCACGTTCGTACACGGACTACGCGTTCGTCCATCTTGCAGCCGAGCTTACAGAACCGTATACACTGCTCGACGACCGA
GACTAGCGACCGACCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGAAGGCGACCATGGCGAGGCGCGCGTGC
TTGATCTCCGCCAGCTGCAGGGTTTCCTTCTTCTCAGGGTCCGCCGCGAGGCCCAGCGGGTCGAAGTAGGAGCCGCCGGGGGTGGCGAGCATGGCCCAGC
GGCCGTGGATGAGCTCGCACTCGCGGAACCTCTGGAGGCCGAACACCTCGGCGTAGGGCTGGAACGGGGTGGACTTGACGTCGGCGTCCTCGAACCGGGT
GCCGATGATCTCGCCCGCCAGGTTCTGGGCCAGGTTCTGGTCAAGGGAGTCCACGTCGTACTGCAGGTACTCCGCGGGCTTCCCGAGGCCGAAGGGGTCG
AACCCGTAGTCGCCGACCAGCGTCCCGTCAAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGTGCGACCTTGGACGCCT
TCTTCGGCGGCGCCTTCTTCTTGCCGAAGCCGAACCGCGCCACGATGCGCCCGTTCTGCGGCGCTGGGTCTGCCAGACGGGTTCCGAGGAACGAGCTCGC
CGCGGCGGCCACCGACGAAGCCATGGCTATTCTCACTCCTGCTTGTCCTCCCCGGCCTTTGCGTGGCTTTGTG