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Detailed information on CNT30340460


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT002959, E-value = 3e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Eragrostis tefSetaria viridis3651.9594.44306forward
CNT30520322Eragrostis tefSetaria italica40.9430.9993.97348forward
CNT30640553Eragrostis tefNymphaea colorata25.0626.4689.2213forward
CNT30708158Eragrostis tefGlycine max3232.8183.82272forward
CNT30290078Eragrostis tefTriticum aestivum33.6537.4388.81286forward
CNT30221568Eragrostis tefHordeum vulgare40.9433.2488.79348forward
CNT30387274Eragrostis tefTriticum turgidum14.7127.996125forward
CNT30562752Eragrostis tefActinidia chinensis35.4123.7985.38301forward
CNT30236263Eragrostis tefBrassica oleracea29.6551.8579.76252forward
CNT30554380Eragrostis tefOryza glaberrima25.8819.9193.18220forward
CNT30244040Eragrostis tefAvena sativa34.7138.1689.83295forward
CNT30262014Eragrostis tefBrassica rapa26.7149.4680.62227forward
CNT30452520Eragrostis tefSaccharum spontaneum41.2923.4293.73351forward
CNT30132672Eragrostis tefLolium perenne38.3558.4288.34326forward
CNT30229721Eragrostis tefAnanas comosus40.8214.7888.18347forward
CNT30720416Eragrostis tefTriticum spelta23.8833.7886.7203forward
CNT30596509Eragrostis tefOryza meridionalis29.0616.2593.52247forward
CNT30370789Eragrostis tefOryza glumipatula36.9422.8292.36314forward
CNT30328621Eragrostis tefAsparagus officinalis12.5935.9187.85107forward
CNT30148661Eragrostis tefBrachypodium distachyon25.2946.1489.3215forward
CNT30581381Eragrostis tefEchinochloa crusgalli21.4165.4795.05182forward
CNT30496270Eragrostis tefDigitaria exilis27.0623.391.74230forward
CNT30116923Eragrostis tefOryza nivara34.3535.192.12292forward
CNT30556732Eragrostis tefPanicum hallii20.7122.5693.18176forward

Expression of CNT30340460

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MDVRIGAASINTWMALINKLRGSGGEGVEDGGVERVAEVGRPVHQLNLQVLDFDRVVHARIELNCTVNSNFKSMFTSVLHVPCPRPAM*

Sequence

>CNT30340460
TGAAACAATGCATGAGCTCAGCTCTTTAACAACAACAATTATCCAGGATTTGTATCATCCCAAAAGATCGATGTACAAGTGAATTCATTAATTCATCATT
GGTTCATATATTACACATCACCAAGAAGTTCCAGCAGATCTCCTACTTAACCATACATCCTCCATTAAGAACACGAACAAAGATCATCGTCCCCATACCC
TCTCGCTCGCCACAAAATCAAACCACGCACGCGTTCATCCATCTCGAACACATTCTCATCGATGGACGTACGGATCGGAGCAGCAAGCATTAATACATGG
ATGGCCTTAATTAATAAATTAAGAGGATCCGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTAGGACGACCCGTCCACCAGCTCA
ACCTGCAGGTTTTGGATTTCGATCGAGTTGTTCATGCACGGATCGAGCTGAATTGCACAGTCAATTCAAATTTCAAATCAATGTTCACAAGTGTACTGCA
CGTACCTTGCCCGCGTCCTGCCATGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGC
ACTCGCGGAAGCGCTGGAGGCCGAACACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGACGTCGGAGGTCTCGAACCGGGTGCCGATCACGTCGCCGGG
CAGGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGGTCGAACTGCAGGTACTCCGCGGGCTTGCCGAGCCCCCACGGGTCGAACCCGTAGTCGCCCACC
AGCGACCCGTCCAGGTAGTCGGGCGCCACCGCGCCCGGGAACCACAGCGG