« Back to Panicum hallii search


Detailed information on CNT30556732


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671994Panicum halliiSetaria viridis22.5627.6396.02176forward
CNT30520223Panicum halliiSetaria italica48.7246.5193.42380forward
CNT30640440Panicum halliiNymphaea colorata20.1323.584.71157forward
CNT30708177Panicum halliiGlycine max22.1816.4484.97173forward
CNT30179479Panicum halliiSecale cereale2528.1887.18195forward
CNT30288841Panicum halliiTriticum aestivum2535.8587.18195forward
CNT30387274Panicum halliiTriticum turgidum2543.5387.18195forward
CNT30562752Panicum halliiActinidia chinensis21.7913.4486.47170forward
CNT30244040Panicum halliiAvena sativa22.5622.7788.07176forward
CNT30452520Panicum halliiSaccharum spontaneum22.5611.7494.32176forward
CNT30132672Panicum halliiLolium perenne22.5631.5485.23176forward
CNT3013737Panicum halliiZea mays14.4924.2596.46113forward
CNT30229673Panicum halliiAnanas comosus22.5625.485.23176forward
CNT30680618Panicum halliiTriticum urartu2520.2986.67195forward
CNT30720416Panicum halliiTriticum spelta18.8524.4687.07147forward
CNT30340460Panicum halliiEragrostis tef22.5620.7193.18176forward
CNT30596550Panicum halliiOryza meridionalis22.5621.6792.05176forward
CNT30370789Panicum halliiOryza glumipatula22.5612.7992.05176forward
CNT30148661Panicum halliiBrachypodium distachyon20.3834.1286.79159forward
CNT30581232Panicum halliiEchinochloa crusgalli47.0551.4794.55367forward
CNT30116923Panicum halliiOryza nivara22.5621.1592.05176forward

Expression of CNT30556732

Peptides detected in this lncRNA

>peptide 1 (86 aa)
TTRCTSECINSSSLVHILQITKSQQQRLSLINETSINKRIGWIFPYPLTHHKMIPRTDSHPSSPAYDSRDHSYFKSSTVRSMDGRS*

>peptide 2 (45 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPCPCWCAERSGGVCVA

>peptide 3 (30 aa)
MCSPRRPPTKPWLLLLVLAGVLRGPVVCVWR

>peptide 4 (34 aa)
MMAPASFLARFWSSESRSNCRYSTGLPSPNGSNP*

>peptide 5 (29 aa)
PQDVQVNALIHHHWFIYYKSPSPSSSGSP*

Sequence

>CNT30556732
ACCACAAGATGTACAAGTGAATGCATTAATTCATCATCACTGGTTCATATATTACAAATCACCAAGTCCCAGCAGCAGCGGCTCTCCCTAATCAACGAGA
CCTCCATTAACAAAAGGATCGGATGGATCTTCCCATACCCTCTCACTCATCACAAAATGATACCACGCACGGATTCACATCCATCGTCTCCAGCGTATGA
TAGCAGAGATCACAGTTACTTCAAGAGTAGCACGGTTCGATCGATGGACGGACGGAGCTAGCCATGGCGGGCGGGCTTAGGAGGATCCTGATAATCCGAA
CGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGCGGGCCGAACACCTCGCTGTAGGGCTGGAACGGGGTGGACTTC
ACCTCGGAGGACTCGAACCGGGTGCCGATGATGGCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGGTCGAACTGCAGGTACTCCACGG
GCTTGCCGAGCCCGAACGGGTCGAACCCGTAGTCGGGCGCCACCGCGCCGGGGAACCATAGCGGCCGGTCGGAGCTGGTCGACGTCTTGGTCACCTTCTT
CGGGGCAGCCGCCTTCTTGCCGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCAAGGCGGGTGCCCAGGAATGTGCTCGCCGCG
GCGGCCACCGACGAAGCCATGGCTGCTGCTCCTTGTCCTTGCTGGTGTGCTGAGAGGTCCGGTGGTGTGTGTGTGGCGGG