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Detailed information on CNT30125939


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 4e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045175Physcomitrium patensPrunus dulcis25.1518.3483.3384forward
CNT30303678Physcomitrium patensTriticum aestivum53.8927.0380180forward
CNT30397679Physcomitrium patensTriticum turgidum19.4623.3887.6965forward
CNT30540898Physcomitrium patensBrassica napus37.4322.4882.4125forward
CNT30238548Physcomitrium patensBrassica oleracea37.4314.8381.6125forward
CNT30442289Physcomitrium patensAegilops tauschii53.8928.4880180forward
CNT3077678Physcomitrium patensBrassica juncea37.4320.3982.4125forward
CNT30264666Physcomitrium patensBrassica rapa37.4314.1782.4125forward
CNT30611481Physcomitrium patensArabis alpina37.7215.4681.75126forward
CNT30476581Physcomitrium patensSaccharum spontaneum35.9313.6480.83120forward
CNT30687021Physcomitrium patensTriticum urartu53.8936.8180180forward
CNT30350305Physcomitrium patensEragrostis tef35.9314.5583.33120forward
CNT30150205Physcomitrium patensBrachypodium distachyon49.439.2981.82165forward
CNT3040126Physcomitrium patensMarchantia polymorpha63.7732.1384.04213forward

Expression of CNT30125939

Peptides detected in this lncRNA

>peptide 1 (33 aa)
TRILSCSVAPAYTLVDLQVRQHVVVHGVRQVVQ*

>peptide 2 (30 aa)
MGPPGYAGLPDPPKNFSSPKKYCLPIDPGL*

>peptide 3 (48 aa)
YKDSILFCSSCLHSSGSSGSSARCCARGPPSGPVAPATPSRSSRIPRS*

Sequence

>CNT30125939
TTACAAGGATTCTATCCTGTTCTGTAGCTCCTGCCTACACTCTAGTGGATCTTCAGGTTCGTCAGCACGTTGTTGTGCACGGGGTCCGCCAAGTGGTCCA
GTAGCTCCTGCAACTCCTTCTCGTTCTTCCCGAATCCCAAGAAGTTGAAGATGGGCCCTCCTGGGTACGCCGGGTTGCCCGATCCTCCCAAAAACTTCTC
CAGCCCCAAAAAGTACTGCTTGCCCATCGATCCGGGCTTGTAGTAGTCCTGCGCGCGTCGGTGCTCCGCGAATCCCATCAACGCCATCTCCAGCACGAAC
AGCGTGTACGGGTCGGCCCAGTAGCTGTAGTTGC