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Detailed information on CNT30583070


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Echinochloa crusgalliOryza sativa12.6748.4688.03142forward
CNT30673615Echinochloa crusgalliSetaria viridis24.2657.8795.96272forward
CNT30687021Echinochloa crusgalliTriticum urartu23.2853.3790.04261forward
CNT30350307Echinochloa crusgalliEragrostis tef28.8142.1191.95323forward
CNT30150205Echinochloa crusgalliBrachypodium distachyon23.4662.6285.93263forward
CNT30497204Echinochloa crusgalliDigitaria exilis17.1335.8991.15192forward

Expression of CNT30583070

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MNTIMHDATRLKPTVHQPAASMHMIEQRHIIIMYVSLPLHSNIMQ*

>peptide 2 (41 aa)
MRPHPRGHWRRAVWRVRWDKGPRARSNLWPQGATAAAAVVL*

>peptide 3 (36 aa)
MASMASLPFLISLSLSSFISFSVLPNPSGLKSGPPG*

Sequence

>CNT30583070
TGTCTCAATTAACAGGATCGATTACTAATTTGTTACAAGCAGCTAGCGTGCAGGCCGGCCAGCGATATATATGAATACAATCATGCATGATGCAACACGC
CTCAAACCCACTGTCCATCAGCCAGCAGCCAGCATGCATATGATCGAACAACGACACATCATCATCATGTACGTCTCGCTCCCACTACACAGCAATATAA
TGCAATAATCCTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACTGGGTCTGCCAGGTGGTCTAGCAGGTTCTGGAACGGGCCGACGCCGGTG
ACGAGGCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCCGTCTTGC
CGAACCCTAGCGGGTTGAAGAGCGGGCCGCCGGGGTAGGACGGGTCGCCGGAGCCGCCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGA
CCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTCGTAG
GTGAGCGGCGGCAGAGACCTTGGCCGGAGGGCTGGAGCTGGCCCTGACGACGAAGGGCGCCTTCCTGGCAGACGACCGGGAGACGGCCGACTGGACGGGG
CGGCCGAGAAGCTGGCGCCCGGAGAGGAGAGCCTGAGCCGCCATGGATCACGTACGCTAGCTTGTTGCTTGCTTCCGACAAGGCGCGCTGCTGCTGCGGT
ATCTGCGGTTGGGGGAGGAGAGGGGCGCACAAGAAGAGCGCGCGGAAAATATGTGACGAGCTGAGCGGGGGGCCCAGGGAAATCTAAACCGCGCTCTCGG
TGGCCGCCGGGGAGATGAGGCCGCATCCGCGGGGCCACTGGCGGCGCGCCGTGTGGCGGGTACGATGGGATAAGGGGCCGCGAGCACGGAGCAACTTGTG
GCCGCAGGGCGCCACTGCTGCTGCTGCTGTTGTGCTGTGAGGAACGGCCTACACCTACACTTGGCCGAGATTTTTTTTTCGCCCCATCATGGCACCACCG
CACCACCACGCTCATAGGTCC