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Detailed information on CNT30264666


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30125939Brassica rapaPhyscomitrium patens14.1737.4382.4125forward
CNT30303822Brassica rapaTriticum aestivum13.6122.0281.67120forward
CNT30540884Brassica rapaBrassica napus74.9475.8100661forward
CNT30238548Brassica rapaBrassica oleracea71.5474.8598.26631forward
CNT30441391Brassica rapaAegilops tauschii13.6122.8681.67120forward
CNT30687021Brassica rapaTriticum urartu13.6124.5481.67120forward
CNT30118654Brassica rapaCitrus clementina40.1465.879.66354forward
CNT30725700Brassica rapaLupinus angustifolius43.4242.7981.46383forward

Expression of CNT30264666

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDWIRQMIKKVLVWPHTGY*

Sequence

>CNT30264666
TGATCTGAAACCACAACATATCTCAGATTTATATTTATTTGAGATGAGTACTTTTCAAGCACCACAGGCAAATATTCGACAATAATCTTTTAAATATGTA
ACTGACTTCCTTGGTGATTGGAAAACCCAACTATTAATCCTAGAAGTTGTTCTTTTTGGCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTA
CAAAGGGTGGTACAATACGAAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGG
CTGGTCAGGACATTGTTGTTGACTGGATCCGCCAAATGATCAAGAAGGTTCTGGTATGGCCCCACACCGGTTACTAGTCCTTGCACAAAATAGCCTAGGA
TTGCGAGCATAGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCC
CCCGGGGTAAGACGGGTCACCCGAACCGGCAAAACCTTTCTCTAAGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCTC
CGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTACGTCCCTGCAGTGTCTGCTGGAATCAAAC
CAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAGCGAACCGTCCGTTGATGATCTCTCCGTAGGCTAACCATCTCGGTTCGAT
GAATCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGAGGGTCGAATCCATAGTCGCCAGGTAAGCTGCAGATTAATCACAAC