Detailed information on CNT30497204


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 9e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Digitaria exilisOryza sativa11.9621.8493.7564forward
CNT30673694Digitaria exilisSetaria viridis40.1946.4490.23215forward
CNT30303678Digitaria exilisTriticum aestivum28.2222.6788.08151forward
CNT30442289Digitaria exilisAegilops tauschii36.4530.8589.23195forward
CNT30474763Digitaria exilisSaccharum spontaneum35.8921.9792.19192forward
CNT30140296Digitaria exilisLolium perenne36.262088.14194forward
CNT30687021Digitaria exilisTriticum urartu32.7135.7988.57175forward
CNT30350310Digitaria exilisEragrostis tef45.0535.0386.31241forward
CNT30368340Digitaria exilisSorghum bicolor20.7524.5690.09111forward
CNT30595666Digitaria exilisOryza meridionalis36.4515.6588.72195forward
CNT30150205Digitaria exilisBrachypodium distachyon36.4546.4385.13195forward
CNT30100474Digitaria exilisOryza rufipogon8.2221.0593.1844forward
CNT30575448Digitaria exilisOryza barthii21.3118.1891.23114forward
CNT30583070Digitaria exilisEchinochloa crusgalli35.8917.1391.15192forward
CNT30115627Digitaria exilisOryza nivara22.066.8986.44118forward
CNT30557361Digitaria exilisPanicum hallii47.2945.8386.96253forward

Expression of CNT30497204

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MASMARRPFLISLSLSSFISFSVFPNPRGLNSGPPGYDGSPEPARNFSRPRKYCFPMDPGLY

>peptide 2 (35 aa)
WNYLSSLESRYRVCTLITIAQYNLWSQLRGSKIHY*

>peptide 3 (84 aa)
MTTNALVELEAGEDVVVDGVGEDGKHGEAAILDLLELELLHLLLGLPKPERVEQWPAGVRRVTGAGEELLEAEEVLLPHGSRVVP

Sequence

>CNT30497204
TGGAATTATTTATCTTCGTTGGAGAGTCGATATAGGGTTTGTACATTGATTACCATTGCGCAATACAACCTCTGGTCTCAATTAAGAGGATCCAAAATCC
ATTACTAGTTTTGTTACAAGCAGCGAGCAGCCCAGAGCCGGCCGGCCATATGATCGAATCACATGTTGCAACCCCTCAAATTAAATCCCTTTACACATTA
GCCAGAGCCAGCATATGAACAACACGTACTACACATCATCACGTCTCGCTTAATTTCCACTACACAACAACAACATATGCATGACGACCAATGCTCTAGT
GGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACGGGGTCGGAGAGGATGGCAAGCATGGCGAGGCGGCCATTCTTGATCTCCTTGAGCTTGAGCTCCTT
CATCTCCTTCTCGGTCTTCCCAAACCCGAGAGGGTTGAACAGTGGCCCGCCGGGGTACGACGGGTCACCGGAGCCGGCGAGGAACTTCTCGAGGCCGAGG
AAGTACTGCTTCCCCATGGATCCCGGGTTGTACCA