Detailed information on CNT30225382


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673978Hordeum vulgareSetaria viridis9.8321.8596.1552forward
CNT30304420Hordeum vulgareTriticum aestivum47.0761.1890.36249forward
CNT30442227Hordeum vulgareAegilops tauschii47.2652.0890.4250forward
CNT30140296Hordeum vulgareLolium perenne44.2324.1282.05234forward
CNT30687021Hordeum vulgareTriticum urartu30.8133.3396.32163forward

Expression of CNT30225382

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MHRTTMLGFRLVELEAGEDVVVDGVGEEDDLEKEDCRGLPSSCLPERRPWAAIVPASSSSCCSER*

>peptide 2 (76 aa)
MLLLTGSERKTTWRRKTAEAYPAAASQREDPGPPLFLQAPPPAAPRDEADAVCVVETEMKVCAPKLTHCYKRREERA

>peptide 3 (42 aa)
MHAARVQIYILHPPSHIYRSRAHVSHDDRRVPCTGRRCSDFA*

Sequence

>CNT30225382
GTCTAATAGGGCAACGGTAATTTGCATGGGTGATCAGATGAGGAGGGGGGAGGGGGTAGAAAAAGCTAGCAGATGCTGCTGAACAAGTGAAGATGGTGAG
AGATGCAATGCACTAATTTTCATAGCACGATATAAATATTACAAGCATGCACGCAGCACGCGTACAAATTTACATTTTACACCCACCCTCGCATATATAC
CGCTCGCGCGCTCACGTTTCCCACGACGACAGACGGGTACCATGCACAGGACGACGATGCTCGGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGT
TGTTGTTGACGGGGTCGGAGAGGAAGACGACCTGGAGAAGGAAGACTGCAGAGGCCTACCCAGCAGCTGCCTCCCAGAGAGAAGACCCTGGGCCGCCATT
GTTCCTGCAAGCTCCTCCTCCTGCTGCTCCGAGAGATGAGGCAGACGCGGTGTGTGTGGTAGAGACTGAGATGAAAGTGTGTGCTCCAAAACTCACCCAC
TGCTACAAAAGGAGAGAGGAACGTGCGCC