Detailed information on CNT30673928


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303678Setaria viridisTriticum aestivum31.5917.2788.7115forward
CNT30442289Setaria viridisAegilops tauschii44.2325.4790.06161forward
CNT30687021Setaria viridisTriticum urartu37.0927.6190.37135forward
CNT30150205Setaria viridisBrachypodium distachyon44.2338.3386.34161forward

Expression of CNT30673928

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKYPRMASMASLPFLISLSLSSFISFSVFPNPSGLKSGPPG*

>peptide 2 (92 aa)
MNHAHITSRFHYNTTGSNALVELEAGEDPLDEVPEDGEHGEPAVLDLLELELLHLLLGLSEPERVEERAAGVGRVAGAGEELLEAQLAEDLRS

Sequence

>CNT30673928
ACAATGATTTACCATGTGTGATACAATTTCTGGTCTCAATTAACAGGATCGATTACTAATTTGTTATAAGCAGCGAGTAGGCCATGAATCATGCACACAT
CACGTCTCGCTTCCACTACAACACAACAGGCAGCAATGCTCTAGTGGAACTTGAGGCTGGTGAGGACCCCCTGGATGAAGTACCCGAGGATGGCGAGCAT
GGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGGTCTTTCCGAACCCGAGCGGGTTGAAGAGCGGGCCGCCGGGGTAG
GACGGGTCGCCGGAGCCGGCGAGGAACTTCTCGAGGCCCAGCTTGCCGAAGACCTCCGGAGCGA