Detailed information on CNT30344080


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675079Eragrostis tefSetaria viridis33.6815.8593.8197reverse complement
CNT30522642Eragrostis tefSetaria italica37.857.0693.58109reverse complement
CNT3086464Eragrostis tefVigna radiata28.8241.0986.7583reverse complement
CNT3082721Eragrostis tefBrassica juncea27.7827.688580reverse complement
CNT30471855Eragrostis tefSaccharum spontaneum257.8388.8972reverse complement
CNT30606743Eragrostis tefGossypium raimondii29.517.9684.7185reverse complement
CNT30363315Eragrostis tefSorghum bicolor36.4612.6590.48105reverse complement
CNT30620812Eragrostis tefCajanus cajan26.046.049275reverse complement
CNT30148817Eragrostis tefBrachypodium distachyon29.867.4491.8686reverse complement
CNT30116702Eragrostis tefOryza nivara21.886.1388.8963reverse complement

Expression of CNT30344080

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (55 aa)
RRRLTRLVWAHLPRSGPGAIAAINCGPEHSREPVPHIFSFYLLCPSRPRKTAAER*

>peptide 2 (95 aa)
ATQAHPPRVGPPPQIRARRDRGYKLRPRAFPRTRATHLLLLPPLPVAPPKNSSREVEFTTSSNGVGELPVHLRVRERGPPRQAVRPGLRRRPRRVP

>peptide 3 (32 aa)
MALESFLFTSESVNEGHPDKLCDQVSDAVLDAC

Sequence

>CNT30344080
GCGACGCAGGCTCACCCGCCTCGTGTGGGCCCACCTCCCCAGATCCGGGCCCGGCGCGATCGCGGCTATAAATTGCGGCCCCGAGCATTCCCGAGAACCC
GTGCCACACATCTTCTCCTTCTACCTCCTCTGCCCGTCGCGCCCCCGAAAAACAGCAGCAGAGAGGTAGAATTTACCACCAGCAGCAATGGCGTTGGAGA
GCTTCCTGTTCACCTCCGAGTCCGTGAACGAGGGCCACCCCGACAAGCTGTGCGACCAGGTCTCCGACGCCGTCCTCGACGCGTGCCT