Detailed information on CNT3086464


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021108Vigna radiataCitrullus lanatus45.055.5384.6291forward
CNT3082721Vigna radiataBrassica juncea34.1623.8886.9669forward
CNT30606743Vigna radiataGossypium raimondii38.127.2184.4277forward
CNT30344080Vigna radiataEragrostis tef41.0928.8286.7583reverse complement
CNT30620812Vigna radiataCajanus cajan508.1389.11101forward
CNT3024999Vigna radiataPopulus trichocarpa41.0933.285.5483forward
CNT30725876Vigna radiataLupinus angustifolius31.686.4685.9464forward

Expression of CNT3086464

Peptides detected in this lncRNA

>peptide 1 (42 aa)
NLAIWILLKAGVKDSIGDLVAELVWVSLVHRLGGKQKCLCHL*

>peptide 2 (34 aa)
QPCYLDLAQGRRQGQHRRFGRRACLGVPRSPTRR*

>peptide 3 (48 aa)
ATLLSGSCSRQASRTASEIWSQSLSGCPSFTDSEVNRNVSAIFKLLNL*

Sequence

>CNT3086464
GCAACCTTGCTATCTGGATCTTGCTCAAGGCAGGCGTCAAGGACAGCATCGGAGATTTGGTCGCAGAGCTTGTCTGGGTGTCCCTCGTTCACCGACTCGG
AGGTAAACAGAAATGTCTCTGCCATCTTTAAACTTTTGAACCTGTAAACACACACATACGAAAAATGAAATTAGTACCTGAAGGGGATATAAATTCGCAA
AA