« Back to Hordeum vulgare search


Detailed information on CNT30225701


BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 7e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641080Hordeum vulgareNymphaea colorata74.8542.5781.36381forward
CNT30266631Hordeum vulgareChenopodium quinoa71.5141.5584.34364forward
CNT30490001Hordeum vulgareOlea europaea21.6122.1881.82110forward
CNT3047443Hordeum vulgarePrunus dulcis41.2617.681.9210forward
CNT30638840Hordeum vulgareCapsicum annuum72.343.0980.98368forward
CNT30508528Hordeum vulgareSolanum lycopersicum36.3535.6584.32185forward
CNT30606743Hordeum vulgareGossypium raimondii27.513.1183.57140forward
CNT30620812Hordeum vulgareCajanus cajan39.6916.2679.7202forward
CNT3055164Hordeum vulgareAmborella trichopoda29.0812.8785.81148forward
CNT30148817Hordeum vulgareBrachypodium distachyon102.7545.2484.13523forward
CNT30116702Hordeum vulgareOryza nivara36.3518.0184.32185forward

Expression of CNT30225701

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KSRLMLIIPGLKSKFSFTSLRISLSGILPVP*

>peptide 2 (46 aa)
VEVDADHPGSEVKVLLHELEDLPVRDLASAVGVDEHRQRLRYTDGI*

>peptide 3 (71 aa)
MTKRPDGFRWKMVFSSRYFAGITGLMTCSLRRAPSLVASTWLRGISSGVSSVAYPNMMPWSPAPTSSGRLVK

>peptide 4 (75 aa)
MRAADDEAARRVQVEDGVLIEVLCGDHWLDDMLLEASSKLGGEHVAEGHQLRGLVGGVPEHDALVTSTDLFWTLGE

Sequence

>CNT30225701
AAGTCGAGGTTGATGCTGATCATCCCGGGTCTGAAGTCAAAGTTCTCCTTCACGAGCTTGAGGATCTCCCTGTCAGGGATCTTGCCAGTGCCGTAGGAGT
CGACGAACACAGACAAAGGCTCAGGTACACCGATGGCATATGAGATCTGCACAATGCAGCGACGTGCAAGGCCACTGGCGATGATGCTCTTGGCGGCCTG
CCTGGCAATGTAGGCGCCACTGCGGTCGACCTTGGTTGGGTGTCGATGATGATCTTGCGGCCGGTGAGGCCGGCATCGCCATGAGGGCCGCCGATGACGA
AGCGGCCAGACGGGTTCAGGTGGAAGATGGTGTTCTCATCGAGGTACTTTGCGGGGATCACTGGCTTGATGACATGCTCCTTGAGGCGAGCTCCAAGCTT
GGTGGCGAGCACGTGGCTGAGGGGCATCAGCTCAGGGGTCTCGTCGGTGGCGTACCCGAACATGATGCCCTGGTCACCAGCACCGACCTCTTCTGGACGC
TTGGTGAAG