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Detailed information on CNT3024331


BLAST search results

BLAST vs Swiss-Prot:
sp|P47916|METK_POPDE, E-value = 4e-84

BLAST vs NONCODE:
NONPOPT001948, E-value = 3e-148

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520776Populus trichocarpaSetaria italica33.2751.5680.69347forward
CNT30641080Populus trichocarpaNymphaea colorata30.3935.4282.97317forward
CNT30490001Populus trichocarpaOlea europaea24.6451.8185.21257forward
CNT30303722Populus trichocarpaTriticum aestivum34.4259.2479.11359forward
CNT3086110Populus trichocarpaVigna radiata27.0425.2281.91282forward
CNT30174161Populus trichocarpaTrifolium pratense34.3245.3781.28358forward
CNT30144438Populus trichocarpaMedicago truncatula26.3756.2481.45275forward
CNT30310308Populus trichocarpaCamelina sativa15.5370.1383.33162forward
CNT30606743Populus trichocarpaGossypium raimondii34.7133.984.81362forward
CNT30218668Populus trichocarpaKalanchoe fedtschenkoi23.262.5383.47242forward
CNT30212612Populus trichocarpaHelianthus annuus21.1991.784.16221forward
CNT30620812Populus trichocarpaCajanus cajan30.4925.685.53318forward
CNT30432398Populus trichocarpaPapaver somniferum34.7129.8284.81362forward
CNT30570674Populus trichocarpaVitis vinifera34.7138.3587.02362forward
CNT30148817Populus trichocarpaBrachypodium distachyon34.1330.881.74356forward

Expression of CNT3024331

Peptides detected in this lncRNA

>peptide 1 (46 aa)
QIQQKQQQVNIVLNGEKNHILQLCCRSHFLTYIIISSYLRSSNGNT*

>peptide 2 (58 aa)
MAKRIIYCSSAAVPTSLHTSLLALIYAAVTETHENTSFFNLFFSQVTIEQQSSKEHVK*

>peptide 3 (35 aa)
PDSTKAAASKHCIEWRKESYIAALLPFPLPYIHHY*

>peptide 4 (32 aa)
MALITSTNLFRSLGEMTMYTLGNIRTLLLNVN*

>peptide 5 (36 aa)
MTMLVLVQVSHATLLSGSCAKQASSTASEIWSQSLSG

>peptide 6 (31 aa)
MLTRTLQLSASRPTSADVNPMFLQVSRTIFS*

Sequence

>CNT3024331
GCCAGATTCAACAAAAGCAGCAGCAAGTAAACATTGTATTGAATGGCGAAAAGAATCATATATTGCAGCTCTGCTGCCGTTCCCACTTCCTTACATACAT
CATTATTAGCTCTTATCTACGCAGCAGTAACGGAAACACATGAGAATACCTCTTTTTTCAACTTGTTCTTTTCTCAGGTAACAATCGAACAACAATCTTC
AAAAGAACACGTAAAATGAAGAAAAAATAAAAAGAAGACAGGCTGAAAGGCAATAGGCAAAATATCCATACATTAGGAACTGATATAGAGACCTTAAGCT
TGGACCTTATTGTCCCACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCGGGGTCATCTCTGCCAAAGTGTCCATATGCTGCAGTCTTCAAGAACCTGC
TATTGCCACCTCTCTTGAGGTCAAGATTGATGGAAATCATACCAGGTCTGAAATCAAAGCTCTCCTTCACGATCTGAAGGATCTCTTTGTCAGGAATCTT
TCCAGTGCCATAAGTGTCTACAAATACTGACAGAGGCTCAGGAACACCAATGGCATAGGAGACCTGAACGATGCACCTCCTAGCAAGCCCACTGGCAACA
ATACTCTTGGCGGCTTGCCTGACAATGTAAGCTCCACTCCTATCCACCTTGGTTGGGTCTTTTCCAGAGAAGGCATCAATTCAGGGGTCTCGTCAGTGGC
ATAGCCAAACATATGGCCTTGATCACCAGCACCAATCTCTTCCGGTCTCTTGGAGAAATGACCATGTACACCCTGGGCAATATCAGGACTTTGTTGCTCA
ATGTTAACTAGAACCTTGCAATTGTCGGCATCAAGACCCACATCGGCAGATGTGAATCCAATGTTTCTGCAAGTATCACGCACAATCTTCTCGTAATCTA
CATCAGCCTTGGTGGTGATCTCGCCAAAAACCATGACCATGTTGGTCTTAGTGCAAGTCTCGCATGCCACCTTGCTGTCAGGGTCTTGCGCCAAGCAAGC
ATCGAGTACGGCATCAGAGATCTGGTCACAGAGCTTATCTGGG