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Detailed information on CNT30467175


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318276Saccharum spontaneumCorylus avellana26.56.0110062forward
CNT30547713Saccharum spontaneumIpomoea triloba26.57.2396.7762forward
CNT30517219Saccharum spontaneumJuglans regia26.53.3498.3962forward
CNT30500340Saccharum spontaneumCoffea canephora26.55.3395.1662forward
CNT3043430Saccharum spontaneumPrunus dulcis25.6410.0598.3360forward
CNT30307634Saccharum spontaneumTriticum aestivum26.59.798.3962forward
CNT30227210Saccharum spontaneumHordeum vulgare25.6413.396.6760forward
CNT30399552Saccharum spontaneumTriticum turgidum26.59.7598.3962forward
CNT30564366Saccharum spontaneumActinidia chinensis26.510.6996.7762forward
CNT30144286Saccharum spontaneumMedicago truncatula25.6416.996.6760reverse complement
CNT30442977Saccharum spontaneumAegilops tauschii26.513.2298.3962forward
CNT30248711Saccharum spontaneumAvena sativa25.6410.6296.6760forward
CNT3078393Saccharum spontaneumBrassica juncea26.514.1993.5562forward
CNT30132841Saccharum spontaneumLolium perenne26.511.9295.1662forward
CNT30219095Saccharum spontaneumKalanchoe fedtschenkoi26.53.2396.7762reverse complement
CNT30716113Saccharum spontaneumMalus domestica golden26.510.7810062forward
CNT30625768Saccharum spontaneumDaucus carota26.510.895.1662forward
CNT30348934Saccharum spontaneumEragrostis tef26.53.510062reverse complement
CNT30596688Saccharum spontaneumOryza meridionalis25.6411.1398.3360forward
CNT30154619Saccharum spontaneumPrunus persica25.6414.7898.3360forward
CNT30574365Saccharum spontaneumVitis vinifera25.6410.1710060forward
CNT3032717Saccharum spontaneumTheobroma cacao25.646.8610060forward
CNT3057178Saccharum spontaneumAmborella trichopoda26.510.7598.3962reverse complement
CNT30320568Saccharum spontaneumAsparagus officinalis26.510.296.7762forward
CNT30118123Saccharum spontaneumCitrus clementina25.6410.6696.6760forward
CNT30593864Saccharum spontaneumEragrostis curvula26.511.1195.1662forward
CNT30556718Saccharum spontaneumPanicum hallii26.513.8495.1662forward
CNT30112128Saccharum spontaneumFicus carica25.6410.9796.6760forward

Expression of CNT30467175

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MSPVDVGLEPLLEKSVEEEAHEEAEEEAPKDEAEIQRNSAACHVVTHLKLGDVAYAVSSLVLFQECPIQADVNCTAR

>peptide 2 (43 aa)
MLDLSLCLRNLWKKKRMRRLKRKRRKMRQRSRETVLLVMLSPI*

Sequence

>CNT30467175
TATGAGCCCCGTGGATGTTGGACTTGAGCCTCTGCTTGAGAAATCTGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCA
GAGATCCAGAGAAACAGTGCTGCTTGTCATGTTGTCACCCATCTGAAGCTGGGTGATGTAGCATATGCAGTTTCGAGCCTTGTGTTGTTCCAAGAGTGTC
CTATCCAAGCTGATGTTAACTGTACCGCGAGGTG