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Detailed information on CNT3071712


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675831Quercus suberSetaria viridis20.1514.7396.2580forward
CNT30523531Quercus suberSetaria italica20.1511.6696.2580forward
CNT30318276Quercus suberCorylus avellana22.428.6395.5189forward
CNT30547713Quercus suberIpomoea triloba20.49.4495.0681forward
CNT30518318Quercus suberJuglans regia20.651398.7882forward
CNT30500546Quercus suberCoffea canephora20.1517.289580forward
CNT30278460Quercus suberChenopodium quinoa21.6613.8398.8486forward
CNT30401878Quercus suberBeta vulgaris21.6613.4896.5186forward
CNT30524689Quercus suberPhaseolus vulgaris20.9118.2495.1883forward
CNT30628518Quercus suberVigna unguiculata21.168.3595.2484forward
CNT30195551Quercus suberPisum sativum20.9116.0995.1883forward
CNT30494259Quercus suberOlea europaea20.416.0795.0681forward
CNT30506885Quercus suberNicotiana attenuata20.6515.1397.5682forward
CNT30712442Quercus suberGlycine max21.165.0195.2484forward
CNT30638745Quercus suberCapsicum annuum21.4116.796.4785forward
CNT3094527Quercus suberSolanum tuberosum21.4116.2896.4785forward
CNT30307634Quercus suberTriticum aestivum20.412.6893.8381forward
CNT30227210Quercus suberHordeum vulgare20.1517.7493.7580forward
CNT30399552Quercus suberTriticum turgidum20.412.7493.8381forward
CNT30564366Quercus suberActinidia chinensis21.1614.4892.8684forward
CNT3085655Quercus suberVigna radiata20.9117.3395.1883forward
CNT30541757Quercus suberBrassica napus20.9113.5495.1883forward
CNT30235682Quercus suberBrassica oleracea20.1515.6996.2580forward
CNT30248711Quercus suberAvena sativa20.414.3493.8381forward
CNT3060259Quercus suberArabidopsis lyrata21.6610.2993.0286forward
CNT3081183Quercus suberBrassica juncea20.415.496.381forward
CNT30261673Quercus suberBrassica rapa20.157.39580forward
CNT30601041Quercus suberFraxinus excelsior20.414.5293.8381forward
CNT30468162Quercus suberSaccharum spontaneum20.1510.939580forward
CNT30610456Quercus suberGossypium raimondii21.419.1492.9485forward
CNT30213082Quercus suberHelianthus annuus20.9118.4993.9883forward
CNT30715353Quercus suberMalus domestica golden20.656.6796.3482forward
CNT30722856Quercus suberTriticum spelta20.419.1593.8381forward
CNT30478095Quercus suberArabidopsis halleri20.1518.8792.580forward
CNT30596688Quercus suberOryza meridionalis20.415.0397.5381forward
CNT30355299Quercus suberLactuca sativa20.9111.9493.9883forward
CNT30642554Quercus suberCannabis sativa21.1614.5692.8684forward
CNT3024261Quercus suberPopulus trichocarpa20.9110.1395.1883forward
CNT30120214Quercus suberCitrus clementina20.9116.1896.3983forward
CNT30584684Quercus suberEchinochloa crusgalli20.1516.7496.2580forward
CNT30604511Quercus suberOryza punctata20.415.5596.381forward
CNT30174981Quercus suberVigna angularis20.9116.8795.1883forward
CNT30112246Quercus suberFicus carica20.9114.8795.1883forward
CNT30723374Quercus suberLupinus angustifolius20.659.2997.5682forward

Expression of CNT3071712

Peptides detected in this lncRNA

>peptide 1 (55 aa)
HIFPSDQLGFLKKPNAARNTTAADFVSPITMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (35 aa)
MLTDTVSYCLMCCLFESRETNRGLRFRLFSVLSFD*

Sequence

>CNT3071712
CACATTTTCCCCTCGGATCAACTAGGGTTTCTGAAAAAACCAAACGCAGCAAGAAACACAACCGCGGCGGATTTCGTTAGTCCAATCACCATGAGAGCCA
AGTGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCTAAGTAGAAATGCTTACAGATACAGTCTCCTATTGTTTA
ATGTGTTGTCTTTTTGAGTCTCGAGAAACAAACAGAGGATTGCGTTTTCGTTTGTTCTCTGTATTGTCTTTTGACTAAAACTCTGTTGTTGTTAGATTCT
ATCTAATGGATTATTATTATTAGTTTTTGGATTTTTATTTGGTTCTGTTTTAATTAATTTTTTTGAGAATGTTTATGATTCCGCATCATAATTGCGC