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Detailed information on CNT30232760


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522415Ananas comosusSetaria italica14.692091.0467forward
CNT30547454Ananas comosusIpomoea triloba16.8923.4885.7177forward
CNT30703316Ananas comosusQuercus lobata14.0420.8592.1964forward
CNT30373911Ananas comosusArabidopsis thaliana14.4722.0790.9166reverse complement
CNT30728687Ananas comosusCorchorus capsularis16.6725.0889.4776forward
CNT3070208Ananas comosusQuercus suber12.522.3591.2357reverse complement
CNT30382680Ananas comosusManihot esculenta14.4721.7887.8866forward
CNT30566738Ananas comosusActinidia chinensis16.4520.899275forward
CNT30591720Ananas comosusMusa acuminata14.692188.0667forward
CNT3087060Ananas comosusVigna radiata15.5723.5187.3271forward
CNT30541125Ananas comosusBrassica napus16.6724.7689.4776forward
CNT30236855Ananas comosusBrassica oleracea14.4721.3690.9166forward
CNT30171637Ananas comosusTrifolium pratense18.227.4885.5483forward
CNT30313675Ananas comosusCamelina sativa14.9122.9788.2468reverse complement
CNT3059454Ananas comosusArabidopsis lyrata16.4524.7589.3375forward
CNT3076575Ananas comosusBrassica juncea14.4721.0290.9166forward
CNT30263689Ananas comosusBrassica rapa14.4721.590.9166forward
CNT30612154Ananas comosusArabis alpina15.3523.0387.1470reverse complement
CNT30128358Ananas comosusCorymbia citriodora17.3228.6287.3479reverse complement
CNT30714905Ananas comosusMalus domestica golden14.6922.1991.0467forward
CNT30477933Ananas comosusArabidopsis halleri16.4524.7590.6775forward
CNT30361740Ananas comosusSorghum bicolor14.6921.9788.0667forward
CNT30410045Ananas comosusPapaver somniferum14.4722.387.8866reverse complement
CNT30644548Ananas comosusCannabis sativa17.3224.5389.8779forward
CNT3058749Ananas comosusAmborella trichopoda12.0620.1590.9155forward
CNT30105324Ananas comosusOryza longistaminata15.5722.2690.1471reverse complement
CNT30120361Ananas comosusCitrus clementina16.6725.0886.8476reverse complement
CNT30174907Ananas comosusVigna angularis15.5723.2888.7371forward
CNT30726065Ananas comosusLupinus angustifolius13.8220.4590.4863forward

Expression of CNT30232760

Peptides detected in this lncRNA

>peptide 1 (60 aa)
LDRRAQLRELVTRAGATGWAWTFDGVVGSGLQLCEGLARPVQVGFVGHVGPGGGFGSSGP*

>peptide 2 (67 aa)
ASIAELSCESLLPERGQQGGLGRLMVWLGLGCSCARGWPARSKLGLWVMWAQAEALGQVAPEVEGNA*

Sequence

>CNT30232760
GCCTCGATCGCCGAGCTCAGTTGCGAGAGCTTGTTACCCGAGCGGGGGCAACAGGGTGGGCTTGGACGTTTGATGGTGTGGTTGGGTCTGGGCTGCAGTT
GTGCGAGGGGCTGGCCCGCCCGGTCCAAGTTGGGTTTGTGGGTCATGTGGGCCCAGGCGGAGGCTTTGGGTCAAGTGGCCCCTGAAGTGGAGGGGAACGC
GTGAGGCTGGCTTCACAGAGCAGCGAACACCTCCCGCTCTCAACGGTGGACGGATTACGGGCCGCCGCATTCGCAGTCCAATATGGCCCAGCAGCCCACT
CAAACGGACATCCACTTTTTTTTATCTTTTATTTTTATTTATGGCTCTGTAAATTAGGCCCAAATTCTATTTCACTGTTTATGTTTTTGTGGGCTTATAA
GGAGGATGTTTATGTTTTGGCTATATATACGAGTTACCTGCAACGTAGTCTTTTTT