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Detailed information on CNT30547627


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728687Ipomoea trilobaCorchorus capsularis8.5128.3890.786reverse complement
CNT3070208Ipomoea trilobaQuercus suber6.6326.2788.0667forward
CNT30526596Ipomoea trilobaPhaseolus vulgaris930.0385.7191reverse complement
CNT30504654Ipomoea trilobaNicotiana attenuata6.6322.0491.0467reverse complement
CNT30634223Ipomoea trilobaCapsicum annuum6.2321.5890.4863forward
CNT3094411Ipomoea trilobaSolanum tuberosum5.9320.1393.3360forward
CNT30587521Ipomoea trilobaMusa acuminata7.9124.4687.580reverse complement
CNT3084184Ipomoea trilobaVigna radiata7.3224.2689.1974reverse complement
CNT30544072Ipomoea trilobaBrassica napus6.9223.189070reverse complement
CNT30238127Ipomoea trilobaBrassica oleracea7.1223.6188.8972reverse complement
CNT30509597Ipomoea trilobaSolanum lycopersicum5.9320.769060forward
CNT30171637Ipomoea trilobaTrifolium pratense8.0126.8288.8981reverse complement
CNT30145867Ipomoea trilobaMedicago truncatula7.4224.758875reverse complement
CNT3059454Ipomoea trilobaArabidopsis lyrata7.6225.4188.3177reverse complement
CNT30260145Ipomoea trilobaBrassica rapa6.9223.189070reverse complement
CNT30653438Ipomoea trilobaRosa chinensis7.5224.6890.7976reverse complement
CNT30477933Ipomoea trilobaArabidopsis halleri7.6225.4188.3177reverse complement
CNT30408305Ipomoea trilobaPapaver somniferum6.9224.229070forward
CNT3053266Ipomoea trilobaAmborella trichopoda6.1320.1388.7162reverse complement
CNT3026903Ipomoea trilobaPopulus trichocarpa6.6322.0491.0467reverse complement
CNT30175002Ipomoea trilobaVigna angularis7.4225.089275reverse complement
CNT30726065Ipomoea trilobaLupinus angustifolius7.3224.0390.5474reverse complement

Expression of CNT30547627

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKPWFFLYGNCIIFVERNGRDGLALIHFHYQFHFTLTLISFFFYYYYLV*

>peptide 2 (91 aa)
MLRPVILPLQRGGGVRCSVKPASRGALRCSVKPASRGALRSKGREASAFAETPRPRSPLGTGRPVNSIPSPAFKVSPIIPPLKVSPIIPPS*

Sequence

>CNT30547627
CGGCAATATAAGACTTTAACAGGCAAAAGGAAAAAGACAGTGGTTTAATTTGGACACAACCCATCTGGCGCTAATGGACTGAAGATGCTCCGGCCTGTTA
TCCTTCCACTGCAGAGAGGAGGAGGTGTTCGCTGCTCTGTGAAACCAGCCTCACGCGGTGCCCTCCGCTGCTCTGTGAAACCAGCCTCACGCGGTGCCCT
CCGATCTAAAGGCCGAGAAGCCTCCGCCTTCGCAGAAACTCCACGGCCACGCTCACCACTTGGAACGGGCAGACCAGTAAATAGCATCCCAAGCCCAGCC
TTCAAGGTAAGCCCAATTATTCCACCATTAAAGGTAAGCCCAATTATTCCACCATCTTAATGCTCCCACGTGGGTTACAAGCTCGCGCTACCAAGCCCAG
GGAACAGAGTTCCTACCTACGGACTTATTAAGAAGAAATATTCCTCATCTGGTTCCAATGTGGGAATTATGCGAGCCTTTCGTGGGGAAAAAATGGAGCA
GAAAACTCTGATGTATTTATGTTTAACTTAGGAATGTAGATGAAGCCTTGGTTTTTTTTGTATGGAAATTGCATCATTTTTGTTGAACGGAATGGCAGAG
ATGGGTTAGCTTTGATTCATTTCCATTATCAATTTCATTTCACCCTCACATTAATTTCCTTTTTTTTTTATTATTATTATTTAGTTTAAATTGTGCGGGC
TGAAGTTTTAGAAAAGAATTGAAGTTGTAGAGGGGGTTTGTATAGATTGGTTATTTGGAAGCCTTGGTACTATATATGTAAAATTTAGTAGTTTTGATGA
TTTATTGAGTTTATGGGAATTTAGGGTTGTGATTTGAGATTATGCATAAACATTTTTTGTCATGCTACCTTATGTGCAATTTGATCTTTTTTATGGATAA
TGGATAAATAATATAAGCAGTTTACATAGAGGAAATTGGGATGGTGCAATTAAGAGTATCATCAGCAACCTCTGATCTTTCTGCAGCAAATCTTGACTGG
TGGCATTCGAG