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Detailed information on CNT30714946


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522415Malus domestica goldenSetaria italica14.1124.4890.2482reverse complement
CNT30373911Malus domestica goldenArabidopsis thaliana11.1921.7490.7765forward
CNT30727745Malus domestica goldenCorchorus capsularis12.2225.0994.3771reverse complement
CNT30382680Malus domestica goldenManihot esculenta11.3621.7890.9166reverse complement
CNT30526756Malus domestica goldenPhaseolus vulgaris13.7726.3288.7580reverse complement
CNT30507383Malus domestica goldenNicotiana attenuata12.5623.9387.6773reverse complement
CNT3044357Malus domestica goldenPrunus dulcis37.0170.7285.12215reverse complement
CNT30304809Malus domestica goldenTriticum aestivum12.5623.7889.0473reverse complement
CNT30566738Malus domestica goldenActinidia chinensis14.9724.2394.2587reverse complement
CNT3084405Malus domestica goldenVigna radiata11.5322.2689.5567reverse complement
CNT30541131Malus domestica goldenBrassica napus15.1528.5789.7788reverse complement
CNT30236855Malus domestica goldenBrassica oleracea15.1528.4889.7788reverse complement
CNT30171622Malus domestica goldenTrifolium pratense12.9124.838875reverse complement
CNT30442570Malus domestica goldenAegilops tauschii11.3621.7889.3966reverse complement
CNT30669640Malus domestica goldenTriticum dicoccoides12.3923.7688.8972reverse complement
CNT30313675Malus domestica goldenCamelina sativa11.5322.6492.5467forward
CNT3059454Malus domestica goldenArabidopsis lyrata11.5322.1194.0367reverse complement
CNT3076575Malus domestica goldenBrassica juncea15.1528.0389.7788reverse complement
CNT30263689Malus domestica goldenBrassica rapa15.1528.6689.7788reverse complement
CNT3015222Malus domestica goldenZea mays13.9427.3690.1281reverse complement
CNT30339265Malus domestica goldenEragrostis tef15.6628.4487.9191forward
CNT30477933Malus domestica goldenArabidopsis halleri11.5322.1194.0367reverse complement
CNT30361740Malus domestica goldenSorghum bicolor14.1126.8989.0282reverse complement
CNT30644781Malus domestica goldenCannabis sativa14.9737.3490.887forward
CNT30175046Malus domestica goldenVigna angularis10.8420.6692.0663reverse complement
CNT30724440Malus domestica goldenLupinus angustifolius10.6720.4695.1662reverse complement

Expression of CNT30714946

Peptides detected in this lncRNA

>peptide 1 (39 aa)
VSTHETIWASGAPARNPSTIESGRFSLLCETSLTHCPPL*

>peptide 2 (47 aa)
RSQPMRQSGLAEHRPVILPPLRAGGFRCSVKPASRIALRSKGLVAQA*

>peptide 3 (87 aa)
MRQSGLAVHRHVILPLLRAGGFRCSVKPASRIALRSKGHGPSLSPNHRAQLSTWNGRASKLQHQVLPNGSNRCPTTLVPPLGLQARVT

Sequence

>CNT30714946
AGGTCTCAACCCATGAGACAATCTGGGCTAGCGGAGCACCGGCCCGTAATCCTTCCACCATTGAGAGCGGGAGGTTTTCGCTGCTCTGTGAAACCAGCCT
CACGCATTGCCCTCCGCTCTAAGGGCCTCGTGGCCCAAGCTTAAGCCCGAACCACAGGGTCCAACTCACAACTTGGAATGGGCGAGCCAGCAAATTGCAA
CGTCTAGTCCTGCCGAATGGGTCGAACCGATGTCCCACCACCTTGGTGCCCCCATTTGGGTCACAAGCTAGCATGACTTAGCTCAGCGAACAGTGGTGGT
TCAACTGGTTTCAACCCATGAGACAATCTGGGCTAGCGGTGCACCGACACGTCATCCTTCCACTGTTGAGAGCGGGAGGTTTTCGCTGCTCTGTGAAACC
AGCCTCACGCATTGCCCTCCGCTCTAAGGGCCACGGCCCAAGCTTAAGCCCGAACCACAGGGCCCAACTCTCAACTTGGAACGGGCGAGCCAGCAAATTG
CAACATCAAGTCCTGCCAAATGGATCGAACCGATGTCCCACCACCTTGGTGCCCCCACTTGGGTTACAAGCAAGAGTCACT