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Detailed information on CNT30395700


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618210Triticum turgidumSesamum indicum18.9742.5192.0588reverse complement
CNT30632354Triticum turgidumVigna unguiculata31.6810.1591.16147forward
CNT30199286Triticum turgidumPisum sativum32.3321.1692150forward
CNT30708642Triticum turgidumGlycine max24.3523.6991.15113forward
CNT3090412Triticum turgidumSolanum tuberosum31.686.6691.16147forward
CNT30193370Triticum turgidumSecale cereale10028.7398.06464forward
CNT30286546Triticum turgidumTriticum aestivum10031.2998.92464forward
CNT30226752Triticum turgidumHordeum vulgare75.8687.7897.44352forward
CNT30556068Triticum turgidumOryza glaberrima101.0863.993.39469forward
CNT30145111Triticum turgidumMedicago truncatula21.3422.1591.9299forward
CNT30435040Triticum turgidumAegilops tauschii10051.6198.92464forward
CNT30662532Triticum turgidumTriticum dicoccoides88.1559.3698.04409forward
CNT30309624Triticum turgidumCamelina sativa24.3526.7892.92113forward
CNT30230699Triticum turgidumAnanas comosus85.9968.3284.96399forward
CNT30679835Triticum turgidumTriticum urartu99.7836.0996.11463forward
CNT30622073Triticum turgidumCajanus cajan26.9431.1793.6125forward
CNT30421666Triticum turgidumPapaver somniferum99.5787.0181.6462forward
CNT3025179Triticum turgidumPopulus trichocarpa26.9415.6292.8125forward
CNT3035458Triticum turgidumCucumis melo32.338.1393.33150forward
CNT30149347Triticum turgidumBrachypodium distachyon46.5527.3193.98216forward
CNT30104480Triticum turgidumOryza rufipogon24.3522.2994.69113forward
CNT30499024Triticum turgidumDigitaria exilis76.2923.2692.66354forward
CNT30117031Triticum turgidumOryza nivara87.2821.9992.84405forward

Expression of CNT30395700

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MICLPYKGPEIPCLRIIGKCININTAVSRGSTKVCKL*

Sequence

>CNT30395700
AAAAATATATAAAAGATCGTTGGGCCATGCGGGTTCCCCGTAATAATTATGCCCCATCCCTTTAGCTAATTTAGCTCTTAATACAGGATCATTTAAGTCT
GGTTTCTTTGTTACTCCCATAATCCGCCTTCTTTCTTTCGTAAAATTAACTTCAACTATTTGTATTGTATAAAAATACTTTGGAGTTGAAGAGAAGTATC
CAAATGACATGTGTTATTTTACAATAACCCATCCTTGTAGCAATGAAATACCAAAACCTACCCGATATGATATATGATAATTATAATTCTCTATGATATG
CCTTCCCTATAAAGGACCCGAAATACCTTGCTTACGTATCATTGGAAAGTGCATTAACATAAATACGGCAGTAAGCAGAGGCAGTACAAAGGTATGTAAA
CTATAAAAACGAGTCAAAGTAGATTGGCCCACACTAGCACTTCCGCGTAATAACTCCACTAAAG