Detailed information on CNT30556068


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XX7|PETD_AMBTC, E-value = 7e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618210Oryza glaberrimaSesamum indicum14.3150.7291.43105reverse complement
CNT30407229Oryza glaberrimaBeta vulgaris37.4780.4185.82275forward
CNT30632300Oryza glaberrimaVigna unguiculata52.4550.288.83385forward
CNT30201894Oryza glaberrimaPisum sativum50.1420.6686.96368forward
CNT30708642Oryza glaberrimaGlycine max22.2134.1790.18163forward
CNT30395700Oryza glaberrimaTriticum turgidum63.9101.0893.39469forward
CNT30145111Oryza glaberrimaMedicago truncatula25.8942.5190.53190forward
CNT30435040Oryza glaberrimaAegilops tauschii99.4681.294.79730forward
CNT30662532Oryza glaberrimaTriticum dicoccoides91.8397.8294.21674forward
CNT30309624Oryza glaberrimaCamelina sativa50.4187.6886.22370forward
CNT30131654Oryza glaberrimaLolium perenne21.9354.7694.41161forward
CNT30230699Oryza glaberrimaAnanas comosus80.11100.6887.76588forward
CNT30215737Oryza glaberrimaHelianthus annuus31.8876.7290.17234forward
CNT30622073Oryza glaberrimaCajanus cajan52.0495.2690.05382forward
CNT30419844Oryza glaberrimaPapaver somniferum52.0463.9989.27382forward
CNT3025179Oryza glaberrimaPopulus trichocarpa42.6439.1290.73313forward
CNT30104480Oryza glaberrimaOryza rufipogon41.5560.1698.69305forward

Expression of CNT30556068

Peptides detected in this lncRNA

>peptide 1 (41 aa)
GRRNGFWNLLTFSRKGTVNKPVGTETIKRTPNNLLGTVRSI*

>peptide 2 (37 aa)
MRCLPYKGPEIPCLRIIRKCININTAVSRGSTKVCKL*

Sequence

>CNT30556068
GGGCGACGAAATGGATTTTGGAATTTATTGACATTCTCTAGAAAAGGTACTGTCAATAAGCCCGTCGGCACAGAAACCATTAAGAGAACGCCCAATAACT
TATTAGGTACTGTACGGAGTATTTGAAACACGGGAAAGAAGTACCACTCGGGTAATATTTCCAGAGGAGTTGCAAACGGATCCGCCGGTTCACCAATCAT
TGACGGCTCGAGAACCGCTAAACCTACATTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCGTTGGGCCACGCGGGTTCCCCG
TAATAATTATGTCCCATCCCTTTAGCTAATTTTGCTCTTAATACAGGATCGTTTAAGTCAGGTTTCTTTGTTACTCCCATAATCCGCCTTCTTTTCTTTC
GTAAAATTAACTTCAACTATTTGTATTATTTGTATCACAATAGTTCGGAGTTGAAGAGAAGTATCTAAATGACATGTCTTATTTTAGAATAACCCATGTT
TGTAGCAATGAAATACCACAACCTACCCGATATGATATATGAGAATTAGAACTCTCTATGAGATGCCTTCCTTATAAAGGGCCCGAAATACCTTGCTTAC
GTATCATTAGAAAGTGCATTAACATAAATACGGCAGTAAGCAGAGGAAGTACAAAGGTATGTAAACTATAAAAACGAGTCAAAGTGGATTGACCCACACT
AGCACTTCCACGTAATAACTCCACTAAAGGTGAT