Detailed information on CNT30708642


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT000261, E-value = 2e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618210Glycine maxSesamum indicum22.0150.7293.33105reverse complement
CNT30632357Glycine maxVigna unguiculata72.1258.792.73344forward
CNT30201894Glycine maxPisum sativum57.4415.3892.34274forward
CNT30504292Glycine maxNicotiana attenuata33.338.9193.71159forward
CNT3090412Glycine maxSolanum tuberosum51.7811.1991.9247forward
CNT30193370Glycine maxSecale cereale31.249.2391.95149forward
CNT30286546Glycine maxTriticum aestivum31.2410.0591.95149forward
CNT30395700Glycine maxTriticum turgidum20.7521.3491.9299forward
CNT30556068Glycine maxOryza glaberrima31.8720.7190.13152forward
CNT30145111Glycine maxMedicago truncatula36.939.3792.61176forward
CNT30435040Glycine maxAegilops tauschii31.2416.5791.95149forward
CNT30668000Glycine maxTriticum dicoccoides30.8248.5191.84147forward
CNT30309624Glycine maxCamelina sativa39.8345.0292.63190forward
CNT30230699Glycine maxAnanas comosus33.1227.0592.41158forward
CNT30655369Glycine maxRosa chinensis51.788.5592.31247forward
CNT30215737Glycine maxHelianthus annuus33.3352.1393.08159forward
CNT30679835Glycine maxTriticum urartu20.557.6488.7898forward
CNT30622073Glycine maxCajanus cajan37.1144.1494.92177forward
CNT30357898Glycine maxLactuca sativa35.438.4786.39169forward
CNT30421666Glycine maxPapaver somniferum32.9129.5793.63157forward
CNT3025179Glycine maxPopulus trichocarpa33.3319.8894.34159forward
CNT30104480Glycine maxOryza rufipogon50.3147.3488.75240forward

Expression of CNT30708642

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MGSPNMGGSRTAKPTLQAMVPRITTGKIYKRSLGHAGSP*

>peptide 2 (38 aa)
MIIFHHPARALIKDFECIYRKNVCVIHTYMRILCKKIN*

Sequence

>CNT30708642
GTTTGAGTAGGATCCATGGGTTCCCCAAATATGGGTGGTTCTAGAACCGCTAAGCCTACGTTACAGGCAATGGTACCTAGAATTACTACTGGAAAAATAT
ATAAAAGATCGTTGGGCCATGCAGGTTCTCCATAATAATTATGACCCATTCCCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAGTCAGGTTTTTT
TGTTATTGGGATAGGTGAATTCTTATAGATCCATCCTCCGAAAGAACCGGATATGATAATTTTTCATCATCCGGCTCGAGCACTAATCAAAGATTTCGAA
TGTATCTATAGAAAAAATGTATGTGTTATTCACACATATATGAGGATTCTATGTAAGAAAATAAACTAGATTCTCTTTTTTCGAAGTTACAAACAATTCT
TTATTGAAAAAAAAATAAATTAAGTTCATATTAAGTAAACTTTGATAAACGCTCAATACCCGAGTAGGCTTTTAAAA