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Detailed information on CNT30193370

BLAST search results

BLAST vs Swiss-Prot:
sp|A1EA38|CYB6_AGRST, E-value = 1e-153

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315736	Secale cereale	Corylus avellana	15.36	91.18	85.89	248	forward
CNT30618210	Secale cereale	Sesamum indicum	6.5	50.72	93.33	105	reverse complement
CNT30407229	Secale cereale	Beta vulgaris	17.71	83.63	84.97	286	forward
CNT30632354	Secale cereale	Vigna unguiculata	39.81	44.41	88.49	643	forward
CNT30199319	Secale cereale	Pisum sativum	28.36	22.76	89.74	458	forward
CNT30504292	Secale cereale	Nicotiana attenuata	41.3	37.39	89.51	667	forward
CNT30708642	Secale cereale	Glycine max	10.09	34.17	91.41	163	forward
CNT3090242	Secale cereale	Solanum tuberosum	29.78	41.15	85.24	481	forward
CNT30286546	Secale cereale	Triticum aestivum	74.61	81.25	98.76	1205	forward
CNT30226752	Secale cereale	Hordeum vulgare	22.97	92.52	99.73	371	forward
CNT30395700	Secale cereale	Triticum turgidum	28.73	100	98.06	464	forward
CNT3085551	Secale cereale	Vigna radiata	7.37	52.19	88.24	119	forward
CNT30543576	Secale cereale	Brassica napus	40.37	56.89	89.72	652	forward
CNT30554238	Secale cereale	Oryza glaberrima	65.2	98.32	94.49	1053	forward
CNT30145111	Secale cereale	Medicago truncatula	11.64	42.06	90.96	188	forward
CNT30439089	Secale cereale	Aegilops tauschii	97.65	96.99	98.48	1577	forward
CNT30662532	Secale cereale	Triticum dicoccoides	42.29	99.13	98.1	683	forward
CNT30309624	Secale cereale	Camelina sativa	23.47	89.81	86.54	379	forward
CNT30131654	Secale cereale	Lolium perenne	15.73	86.39	96.46	254	forward
CNT30230699	Secale cereale	Ananas comosus	36.35	100.51	87.9	587	forward
CNT30655369	Secale cereale	Rosa chinensis	41.55	23.23	89.12	671	forward
CNT30210627	Secale cereale	Helianthus annuus	43.22	59.25	90.54	698	forward
CNT30679835	Secale cereale	Triticum urartu	47.55	59.86	97.01	768	forward
CNT30622073	Secale cereale	Cajanus cajan	24.21	97.51	89.77	391	forward
CNT30595910	Secale cereale	Oryza meridionalis	18.51	100	94.31	299	forward
CNT30357898	Secale cereale	Lactuca sativa	67.99	55.01	86.79	1098	forward
CNT30422352	Secale cereale	Papaver somniferum	28.17	54.36	90.33	455	forward
CNT3057481	Secale cereale	Amborella trichopoda	8.11	37.22	84.73	131	forward
CNT3025179	Secale cereale	Populus trichocarpa	19.38	39.12	92.01	313	forward
CNT3035458	Secale cereale	Cucumis melo	41.24	36.12	89.79	666	forward
CNT30149347	Secale cereale	Brachypodium distachyon	13.37	27.31	95.37	216	forward
CNT30104480	Secale cereale	Oryza rufipogon	18.89	60.16	95.41	305	forward
CNT30499024	Secale cereale	Digitaria exilis	51.95	55.12	94.52	839	forward
CNT30117031	Secale cereale	Oryza nivara	55.11	48.32	94.94	890	forward
CNT30556546	Secale cereale	Panicum hallii	23.72	100	91.12	383	forward

Expression of CNT30193370

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MICLPYKGPEIPCLRIIGKCININTAVSRGSTKVCKL*

>peptide 2 (41 aa)
MIDRNIANKAIATPIKGVVPQPGATFPYSEFKGFSKLPAPVR

>peptide 3 (44 aa)
MGRNIFTSYIIRNCLNLKTFLKPIIYFTHIPEIPKQKNSAVELP*

>peptide 4 (72 aa)
PKVNDLSMGSVAPIPNQRATTVPIKKTVVATGRRNGFWNLLTFSRKGTVNKPVGTETIKRTPNNLLGTVRSI*

Sequence

>CNT30193370
CCTAAAGTTAACGATTTATCAATGGGTAGTGTTGCTCCAATACCTAACCAAAGAGCTACTACAGTACCGATTAAAAAAACGGTCGTAGCTACTGGGCGGC
GAAATGGATTTTGGAATTTATTGACATTCTCTAGAAAAGGTACTGTCAATAAGCCTGTTGGCACAGAAACCATTAAGAGAACGCCCAATAACTTATTGGG
TACCGTACGGAGTATTTGAAACACGGGAAAGAAGTACCACTCGGGTAATATTTCCAAAGGAGTTGCAAACGGGTCTGCCGGTTCACCAATCATTGATGGC
TCGAGAACCGCTAAACCTACATTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCGTTGGGCCATGCGGGTTCCCCGTAATAAT
TATGTCCCATCCCTTTAGCTAATTTAGCTCTTAATACAGGATCATTTAAGTCTGGTTTCTTTGTTACTCCCATAATCCGCCTTTTTTCTTTCGTAAAATT
AACTTCAACTATTTGTATCGTATAAAAATACTTCGGAGTTGAAGAGAAGTATCCAAATGACATGTGTTATTTTACAATAACCCATGCTTGTAGCAATGAA
ATACCACAACCTACCCGATATGATATATGAGAATTAGAATTCTCTATGATATGCCTTCCCTATAAAGGACCCGAAATACCTTGCTTACGTATCATTGGAA
AGTGCATTAACATAAATACGGCAGTAAGCAGAGGCAGTACAAAGGTATGTAAACTATAAAAACGAGTCAAAGTGGATTGGCCCACACTAGCACTTCCGCG
TAATAACTCCACTAAAGGCGATCCTATTACCGGAATGGCGTCAGGTACACCTGTCACAATTTTGACTGCCCAATAGCCAATTTGATCCCAAGGCAAAGAA
TAACCAGTTACACCAAATGATGCAGTCAAAACAGCCAAAACCACACCTGTCACCCAAGTTAATTCACGGGGTTTTTTAAATCCCCCTGTGAGATACACAC
GAAATACATGCAGGATCATCATTAAAACCATCATACTTGCTGACCATCGATGAACTGATCGGATTAACCAACCAAAGTTGGCCTCGGTCATTATGTATTG
AACCGAGGAAAAAGCCTCTGTAACGGTTGGTCGGTAGTAAAAAGTCATAGCAAAACCGGTAGCGACTTGTACTAGAAAACAAGTAAGTGTAATTCCCCCT
AAACAATAAAATATGTTGACATGGGGAGGAACATATTTACTAGTTATATCATCCGCAATTGCCTGAATCTCAAGACGTTCCTCAAACCAATCATATACTT
TACTCATATTCCAGAGATACCGAAACAAAAAAATTCCGCGGTCGAACTACCATAATATCTAGAAATGTAGAGCTTAAACTAGAAAGGCTTTTTTGGATGG
AAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCATCCAGTAAAATGGAAGAATTATAAATTTCTAAAATGATAGATAGG
AATATAGCGAATAAAGCCATTGCGACCCCCATAAAAGGAGTAGTCCCCCAACCCGGGGCGACTTTCCCATATTCCGAATTCAAGGGTTTCAGTAAACTAC
CTGCACCAGTTCGTT