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Detailed information on CNT30499024


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENT4|CYB6_SACOF, E-value = 3e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315736Digitaria exilisCorylus avellana16.2991.1885.89248forward
CNT30378680Digitaria exilisArabidopsis thaliana16.6920.8787.8254forward
CNT30730483Digitaria exilisCorchorus capsularis6.5722.6890100forward
CNT30632354Digitaria exilisVigna unguiculata43.1745.3787.82657forward
CNT30199319Digitaria exilisPisum sativum34.7626.2988.09529forward
CNT30504292Digitaria exilisNicotiana attenuata42.2536.0487.56643forward
CNT3090412Digitaria exilisSolanum tuberosum23.2616.0385.03354forward
CNT30193370Digitaria exilisSecale cereale55.1251.9594.52839forward
CNT30286546Digitaria exilisTriticum aestivum74.5176.4791.361134forward
CNT30226752Digitaria exilisHordeum vulgare26.48100.594.29403forward
CNT30395700Digitaria exilisTriticum turgidum23.2676.2992.66354forward
CNT30543576Digitaria exilisBrassica napus42.1856.0288.47642forward
CNT30553968Digitaria exilisOryza glaberrima76.2861.5691.91161forward
CNT30439089Digitaria exilisAegilops tauschii55.1251.693.92839forward
CNT30667320Digitaria exilisTriticum dicoccoides22.7357.8694.51346forward
CNT30139987Digitaria exilisLolium perenne37.4570.8184.56570forward
CNT30230643Digitaria exilisAnanas comosus28.8458.0791.57439forward
CNT30655369Digitaria exilisRosa chinensis42.1222.288.3641forward
CNT30210627Digitaria exilisHelianthus annuus42.2554.5888.8643forward
CNT30679636Digitaria exilisTriticum urartu48.7566.1392.59742forward
CNT30338816Digitaria exilisEragrostis tef29.7663.890.07453forward
CNT30595910Digitaria exilisOryza meridionalis19.6510094.98299forward
CNT30357898Digitaria exilisLactuca sativa42.2532.2188.8643forward
CNT30422352Digitaria exilisPapaver somniferum26.6148.3987.41405forward
CNT3057481Digitaria exilisAmborella trichopoda8.4136.3685.16128forward
CNT3035458Digitaria exilisCucumis melo42.2534.8788.96643forward
CNT30149347Digitaria exilisBrachypodium distachyon14.7228.3292.86224forward
CNT30104459Digitaria exilisOryza rufipogon5.6523.9696.5186forward
CNT30117031Digitaria exilisOryza nivara67.3555.6592.881025forward
CNT30556546Digitaria exilisPanicum hallii16.6966.3290.94254forward

Expression of CNT30499024

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MICLPYNGPEIPCLRIIGKCININTAVSRVVQRYVNYKNESKWIGPH*

>peptide 2 (32 aa)
MRRNIFTSYIICSCLNLKTFLKPIIYFIEIGN*

>peptide 3 (40 aa)
MKISFRTAQAETHKFSTDIRKKVQNYISHDIRSICLEDMK*

Sequence

>CNT30499024
GACTTACGTGTTGATTGGATGCGGAGACACCTTTGGTTGTGAATTCTAATGTGGCAGATCCAATTCTCTATCTGCATGGCCAAATTAATAATTCAAGTCA
CACACTCCCATAATCCACCTTATTTTCTTTTGTAAAATTAACTTCAACTATAACTATTTGTATCAAAATACTTCAAAGTTGAAGAGAAGTATCCAAATGA
CATGTCTTATTTTACAATAACCCATGTTTGTAGCAATGAAATACCACAACCTACCCTATATGATATATGAGAATTAGAATTCTCTATGATATGCCTTCCC
TATAACGGACCTGAAATACCTTGCTTACGTATCATTGGAAAGTGCATTAACATAAATACGGCAGTAAGCAGAGTAGTACAAAGGTATGTAAACTATAAAA
ACGAGTCAAAGTGGATTGGCCCACACTAGCACTTCCACGTAATAATTCCACTAAAGGGGATCCTATTACCGGAATCGCTTCAGGTACACCTGTCACAATT
TTGACTGCCCAATAACCAATTTGATCCCAAGGCAAAGAATACCCAGTTACACCAAATGATGCAGTCAATACAGCCAAAACCACACCTGTGACCCAAGTTA
ATTCACGGGGTTTTTAAATCCAGCTGTGAGATACACATGAAATACGTGCAGGATCATCATTAGAACCATCATACTTGCTGACCATCGATGAACTGATCGG
ATTAACCAACCAAAGTTGGCCTCCGTCGTTATATATTGAACGGAGGAACAAGCCTCTGTAATGGTTGGTCGGTAGTAAAAAGTCATAGCAAAACCAGTAG
CCACTTGTACTAGAAAACAAGTAAATGTAATTCCCCCTAAACAATAAAATATGTTGACATGAGGAGGAATATATTTACTAGTTATATCATCTGCAGTTGC
CTGAATCTCAAGACGTTCCTCAAACCAATCATATACTTTATTGAGATAGGTAACTAGCCCGACTCCCCCTCCGAGAACCGTACATGAAAATTTCATTTCG
TACGGCTCAAGCAGAAACACACAAATTTTCAACGGATATTAGAAAAAAGGTTCAAAACTACATAAGCCACGATATTCGATCGATTTGCCTTGAAGATATG
AAATAATAAAAATCCATAATTTCTTCTTTGTATAATTTCTTCTTTGTGATGATAATGCCAAACAATCTCAAGTTGGCTCATCTGTCTTTCTTTCCCGTAT
GTTGATCATTAGAGGCTTCTTGACTTTTCTCTTCCCTATTTTTTAATAAAAATTTATAGTGGTTTTCTAATAGAAATTATCTTGTTGCGATCCTATGAAT
GAGTTCAATTAAAACCTTAGATTCATACTAGAGCCACGATGATGGAGTCTCAAGCTAAACAAAAGATAAGGGTTCTTCGAATAAGAACCGCTTGATGATC
ATTTATTGAAAGAGAAAAAAGTTGTCTTTTGGGCAAACAAAATTGGAAGGAAGAAAATTTCTTTTTTTATTTAGAACTACTTGAATTTTTTTCAGTCTGG
TTGCGAGGTCTAAATAGTGAGT