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Detailed information on CNT30149347


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193370Brachypodium distachyonSecale cereale24.411.9595.34193forward
CNT30300524Brachypodium distachyonTriticum aestivum24.427.5394.82193forward
CNT30226752Brachypodium distachyonHordeum vulgare28.1955.6195.52223forward
CNT30395700Brachypodium distachyonTriticum turgidum24.441.5994.3193forward
CNT30553968Brachypodium distachyonOryza glaberrima28.1911.8291.48223forward
CNT30435040Brachypodium distachyonAegilops tauschii23.6420.895.19187forward
CNT30662532Brachypodium distachyonTriticum dicoccoides24.428.0195.34193forward
CNT30679636Brachypodium distachyonTriticum urartu28.1919.8891.48223forward
CNT30499024Brachypodium distachyonDigitaria exilis28.3214.7292.86224forward
CNT30117031Brachypodium distachyonOryza nivara27.8111.9491.36220forward

Expression of CNT30149347

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSHDLFHFYSMGSYGAFSWMTWLGYDHRKYSPQVNQPILPR*

>peptide 2 (61 aa)
NKVYNYSMTLGKKSFIRLSFPKLHLQLLIENNPILMGKCSISKWAYKFDHDQLLCGLSHVS*

Sequence

>CNT30149347
AGAATAAGGTATATAATTACTCAATGACTCTAGGCAAGAAAAGCTTTATCAGATTATCTTTTCCGAAGTTGCACCTACAACTACTCATTGAAAATAATCC
TATTCTTATGGGTAAATGCTCAATATCCAAGTGGGCTTACAAATTTGATCATGATCAATTGCTTTGTGGATTGTCTCATGTCTCTTGATTAGTTGGTCTT
TATCCCCTCACTATCGCAAGTTTCTTACGCCCAAACAAAGTATTTACTTGTTACTAATAAAAAAATCAAAAAGTTTAGCCTATGCTCTTCCTTAGATCCC
TTCTTTTACTCCGATAGTATTGCGAATCACAATCGATGCAAAGAAAATGAATGCATTTCCATACCATAATAAAAAAAGGTAAGTGTAATAAATAGAGAAT
TGGATCATGTCACATGACTTATTCCATTTCTACTCTATGGGATCTTACGGAGCCTTTTCATGGATGACATGGTTGGGGTATGATCATAGAAAATATTCTC
CTCAAGTGAACCAGCCTATCCTTCCTAGGTAGGGGACTTACGTGTTGATTGGATGCGGAGACACCTTTGTCACACACTCCCATAATCCGCCTTTTTTTCT
TTTGTAAAATTAACTTCAACTATTTGTATTATATCAAAATACTTCGGAGTTGAAGAGAAGTATCCAAATGACATGTGTTATTTTACAATAACCCATGTTT
GTAGCAATGAAATACCACAACCTACCCAATATTATATATGAGAATTCTAATTCTCTATGATATGCCTTCCCTATAAAGGACCCGAAATACC