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Detailed information on CNT30104480


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06GM9|PETD_PIPCE, E-value = 2e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618210Oryza rufipogonSesamum indicum20.7150.7290.48105reverse complement
CNT30407229Oryza rufipogonBeta vulgaris35.1152.0585.96178forward
CNT30632357Oryza rufipogonVigna unguiculata74.5664.5188.62378forward
CNT30201894Oryza rufipogonPisum sativum73.772187.43374forward
CNT30504292Oryza rufipogonNicotiana attenuata59.3716.8788.37301forward
CNT30708642Oryza rufipogonGlycine max47.3450.3188.75240forward
CNT3090412Oryza rufipogonSolanum tuberosum75.3517.386.39382forward
CNT30193370Oryza rufipogonSecale cereale60.1618.8995.41305forward
CNT30286546Oryza rufipogonTriticum aestivum59.5720.3695.7302forward
CNT30395700Oryza rufipogonTriticum turgidum22.2924.3594.69113forward
CNT30556068Oryza rufipogonOryza glaberrima60.1641.5598.69305forward
CNT30145111Oryza rufipogonMedicago truncatula37.4842.5190190forward
CNT30435040Oryza rufipogonAegilops tauschii59.5733.5995.7302forward
CNT30662532Oryza rufipogonTriticum dicoccoides60.1644.2794.43305forward
CNT30309624Oryza rufipogonCamelina sativa63.1275.8388.12320forward
CNT30131654Oryza rufipogonLolium perenne18.3431.6396.7793forward
CNT30230699Oryza rufipogonAnanas comosus59.3751.5493.36301forward
CNT30655369Oryza rufipogonRosa chinensis75.5413.2687.73383forward
CNT30215737Oryza rufipogonHelianthus annuus43.7972.7989.19222forward
CNT30679835Oryza rufipogonTriticum urartu22.098.7391.96112forward
CNT30622073Oryza rufipogonCajanus cajan59.3775.0690.03301forward
CNT30357898Oryza rufipogonLactuca sativa39.4510.0284200forward
CNT30419844Oryza rufipogonPapaver somniferum59.3750.4288.7301forward
CNT3025179Oryza rufipogonPopulus trichocarpa59.3737.6289.7301forward
CNT30151654Oryza rufipogonBrachypodium distachyon10.6520.0792.5954forward

Expression of CNT30104480

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQSYLELLLEKYIKDRWATWVPRNNYVPSL*

Sequence

>CNT30104480
CACAGAAACCATTAAGAGAACGCCCAATAACTTATTAGGTACTGTACGGAGTATTTGAAACACGGGAAAGAAGTACCACTCAGGTAATATTTCCAGAGGA
GTTGCAAACGGATCCGCCGGTTCACCAATCATTGACGGCTCGAGAACCGCTAAACCTACATTAGATGCAATCGTACCTAGAATTACTACTGGAAAAATAT
ATAAAAGATCGTTGGGCCACGTGGGTTCCCCGTAATAATTATGTCCCATCCCTTTAGCTAATTTTGCTCTTAATACAGGATCGTTTAAGTCAGGTTTCTT
TGTTATTGGGATAGGTGAATTCTTTAAGATCCAGCCCCCAAAGGAACCGGACATGAGAATTTTTCATCATCCGGCTCAAGCAAGAATGAAAGAAATAAAA
CCGTAGAAGATCCATAATAGAATAAAGTATATAATGGCTCAATGGCTCTAAGTAAGAAAAGCTTTATCAGATTCTATTTTCCGAAGTTGCACCTACAACT
ATTCATT