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Detailed information on CNT30435040


BLAST search results

BLAST vs Swiss-Prot:
sp|P12119|PETD_WHEAT, E-value = 3e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618210Aegilops tauschiiSesamum indicum11.6850.7293.33105reverse complement
CNT30407229Aegilops tauschiiBeta vulgaris38.6101.4685.01347forward
CNT30632102Aegilops tauschiiVigna unguiculata54.1773.5688.3487forward
CNT30201894Aegilops tauschiiPisum sativum52.9526.7386.76476forward
CNT30708642Aegilops tauschiiGlycine max18.1334.1791.41163forward
CNT3090242Aegilops tauschiiSolanum tuberosum54.2841.7585.66488forward
CNT30395700Aegilops tauschiiTriticum turgidum51.6110098.92464forward
CNT3085551Aegilops tauschiiVigna radiata15.5761.488.57140forward
CNT30556068Aegilops tauschiiOryza glaberrima81.299.4694.79730forward
CNT30145111Aegilops tauschiiMedicago truncatula20.9142.0691.49188forward
CNT30662532Aegilops tauschiiTriticum dicoccoides75.9799.1398.39683forward
CNT30309624Aegilops tauschiiCamelina sativa42.1689.8186.54379forward
CNT30131654Aegilops tauschiiLolium perenne32.0497.9695.49288forward
CNT30230699Aegilops tauschiiAnanas comosus65.29100.5187.73587forward
CNT30215737Aegilops tauschiiHelianthus annuus26.0376.7291.88234forward
CNT30419844Aegilops tauschiiPapaver somniferum54.1781.5788.3487forward
CNT3057915Aegilops tauschiiAmborella trichopoda7.0126.1492.0663reverse complement
CNT3025179Aegilops tauschiiPopulus trichocarpa34.8239.1292.33313forward
CNT30149347Aegilops tauschiiBrachypodium distachyon24.0327.3194.44216forward
CNT30104480Aegilops tauschiiOryza rufipogon33.5959.5795.7302forward
CNT30557534Aegilops tauschiiPanicum hallii18.2427.0296.34164forward

Expression of CNT30435040

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MNQKISKKDLKLMIYQWVMLLQYLTKELLQYRLKKRS*

>peptide 2 (65 aa)
MGNVAPIPNQRATTVPIKKTVVATGRRNGFWNLLTFSRKGTVNKPVGIETIKRTPNNLLGTVRSI*

>peptide 3 (37 aa)
MICLPYKGPEIPCLRIIGKCININTAVSRGSTKVCKL*

Sequence

>CNT30435040
TCACGGTTGAATGAATCAAAAAATATCTAAAAAAGACCTAAAGTTAATGATTTATCAATGGGTAATGTTGCTCCAATACCTAACCAAAGAGCTACTACAG
TACCGATTAAAAAAACGGTCGTAGCTACTGGGCGGCGAAATGGATTTTGGAATTTATTGACATTCTCTAGAAAAGGTACTGTCAATAAGCCTGTTGGCAT
AGAAACCATTAAAAGAACGCCCAATAACTTATTGGGTACCGTACGGAGTATTTGAAACACGGGAAAGAAGTACCACTCGGGTAATATTTCCAGAGGAGTT
GCAAACGGATCTGCCGGTTCACCAATCATTGATGGCTCGAGAACCGCTAAACCTACATTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATA
AAAGATCGTTGGGCCATGCGGGTTCCCCGTAATAATTATGTCCCATCCCTTTAGCTAATTTAGCTCTTAATACAGGATCATTTAAGTCTGGTTTCTTTGT
TACTCCCATAATCCGCCTTTTTTCTTTCATAAAATTAACTTCAACTATTTGTATTGTATAAAAATACTTTGGAGTTGAAGAGAAGTATCCAAATGACATG
TGTTATTTTACAATAACCCATGCTTGTAGCAATGAAATACCAAAACCTACCCGATATGATATATGATAATTATAATTCTCTATGATATGCCTTCCCTATA
AAGGACCCGAAATACCTTGCTTACGTATCATTGGAAAGTGCATTAACATAAATACGGCAGTAAGCAGAGGCAGTACAAAGGTATGTAAACTATAAAAACG
AGTCAAAGTGGATTGGCCCACACTAGCACTTCCGCGTAATAACTCCACTAAAGGCGATCCTATTACCGGAATGGCGTCAGGTACACCTGTCACAATTTT