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Detailed information on CNT3025179


BLAST search results

BLAST vs Swiss-Prot:
sp|Q14FC6|PETD_POPAL, E-value = 1e-78

BLAST vs NONCODE:
NONSTUT000261, E-value = 1e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618210Populus trichocarpaSesamum indicum13.1250.7296.19105reverse complement
CNT30407229Populus trichocarpaBeta vulgaris26.8862.8786.98215forward
CNT30632300Populus trichocarpaVigna unguiculata40.1241.8594.39321forward
CNT30201894Populus trichocarpaPisum sativum37.1216.6890.91297forward
CNT30504292Populus trichocarpaNicotiana attenuata40.2518.0595.34322forward
CNT30708642Populus trichocarpaGlycine max19.8833.3394.34159forward
CNT3090242Populus trichocarpaSolanum tuberosum40.2527.5491.61322forward
CNT30193370Populus trichocarpaSecale cereale39.1219.3892.01313forward
CNT30286546Populus trichocarpaTriticum aestivum39.1221.1192.33313forward
CNT30226752Populus trichocarpaHordeum vulgare1325.9492.31104forward
CNT30395700Populus trichocarpaTriticum turgidum15.6226.9492.8125forward
CNT3085551Populus trichocarpaVigna radiata9.8834.6593.6779forward
CNT30556068Populus trichocarpaOryza glaberrima39.1242.6490.73313forward
CNT30145111Populus trichocarpaMedicago truncatula23.7542.5192.11190forward
CNT30435040Populus trichocarpaAegilops tauschii39.1234.8292.33313forward
CNT30662532Populus trichocarpaTriticum dicoccoides39.1245.4390.73313forward
CNT30309624Populus trichocarpaCamelina sativa36.2568.7291.38290forward
CNT30131654Populus trichocarpaLolium perenne9.7526.5392.3178forward
CNT30230699Populus trichocarpaAnanas comosus5778.0890.13456forward
CNT30655369Populus trichocarpaRosa chinensis3710.2594.93296forward
CNT30215737Populus trichocarpaHelianthus annuus36.595.7490.75292forward
CNT30622073Populus trichocarpaCajanus cajan4079.895.94320forward
CNT30357898Populus trichocarpaLactuca sativa46.518.6486.56372forward
CNT30419844Populus trichocarpaPapaver somniferum46.8862.8191.73375forward
CNT3057915Populus trichocarpaAmborella trichopoda8.1226.9792.3165reverse complement
CNT30104480Populus trichocarpaOryza rufipogon36.2557.289.66290forward

Expression of CNT3025179

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLLQYPTKGPLQYQSKKQLSRPDDEMDFEIAGTETIKRTPNNLLGTVRSI*

Sequence

>CNT3025179
ATTTTATTTTCAAATTGAATCAATTTGAAAAAGACCTAAAGTTAAGGATTTATCAATAGGTAATGTTGCTCCAATACCCAACCAAAGGGCCACTACAGTA
CCAATCAAAAAAACAGTTGTCGCGACCGGACGACGAAATGGATTTTGAAATTGCAGGTACTGAAACCATTAAAAGAACACCCAATAACTTATTGGGTACT
GTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCAAGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCAGGTTCACCAATCATTGATGGTTCTA
GAACCGCTAATCCTACATTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTTGGCCATGCGGGTTCTCCGTAATAATTATG
ACCCATTCCTTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAGTCAGGTTTTTTTGTTACTCCCATAATCCACACTTTTCTCTTAGGAGAATTCACT
TCAACTATTCATGTCAAATAAATAATACAATTTTTTTTTTAGTTGAAGGGAAATATCTAAATACATGTCTTATTCTTTTCAATAATCCATATTTGTAGCA
ATTAAATACTATTCTTACTCCCCCAATCGGTTAATGGTTGATTACAAATATCTATGATCTCTATTCTCTATAAATAGAAATAAAAAGGAATAAAGTTATA
AAGGACCCAAAATACCTTGCTTACGTATCATTGGAAAATGTATTAACATAAATACGGCAGTAAGAAGAGGTAATACAAAAGTGTGTAAACTATAAAAACG