Detailed information on CNT30674570


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 3e-53

BLAST vs NONCODE:
NONSLYT003545, E-value = 1e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387589Setaria viridisTriticum turgidum62.4816.2490.24338forward
CNT30204543Setaria viridisHelianthus annuus38.8295.8985.24210forward
CNT30116198Setaria viridisOryza nivara3915.9891211forward

Expression of CNT30674570

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MSWSSASVGFCPNERITVPSSLVVMQPVTREEHYLLLSQISKIGIAISKYREERGKYCGGTPIMIWCQQ*

>peptide 2 (84 aa)
MTWRSSAAEMKPFWSLSNTRKASLSSSSESVSFILRAISIDLIDHVLELSLGRVLPQRAHHSSKFLGGDAACYTRRTLLTAISN*

>peptide 3 (86 aa)
GHISLGHHHLHELLVVDLAIAIHVSFADHLVNLLVSQLLAEVGHDVAELSRGDEAILVLVKHTEGLLELLLGVSVLHLACHQHRPH*

Sequence

>CNT30674570
GGGCACATCTCACTTGGCCATCATCACCTTCACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCCACGTCAGCTTCGCGGATCATCTCGTCAACCTCC
TCGTCAGTCAGCTTCTCGCCGAGGTTGGTCATGACGTGGCGGAGCTCAGCCGCGGAGATGAAGCCATTCTGGTCCTTGTCAAACACACGGAAGGCCTCCT
TGAGCTCCTCCTCGGAGTCAGTGTCCTTCATCTTGCGTGCCATCAGCATCGACCTCATTGATCATGTCCTGGAGCTCAGCCTCGGTAGGGTTCTGCCCCA
ACGAGCGCATCACAGTTCCAAGTTCCTTGGTGGTGATGCAGCCTGTTACACGAGAAGAACATTACTTACTGCTATCTCAAATTAGTAAAATTGGTATAGC
AATTAGCAAATACAGAGAAGAACGGGGAAAATATTGTGGTGGCACTCCAATCATGATATGGTGTCAACAGTAATAGCAACCATGCTATCAAATAGTGCCC
TAAGACTAACATACGATGTTATTAAAACTAACAACCATGTC