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Detailed information on CNT3096793


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 9e-79

BLAST vs NONCODE:
NONPOPT000052, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Solanum tuberosumOryza sativa26.798.1785.12168forward
CNT30378266Solanum tuberosumArabidopsis thaliana19.9436.6684.8125forward
CNT30617519Solanum tuberosumSesamum indicum57.117.8287.43358forward
CNT30387589Solanum tuberosumTriticum turgidum36.6811.0582.61230forward
CNT30586817Solanum tuberosumMusa acuminata31.2619.6485.71196forward
CNT3085845Solanum tuberosumVigna radiata38.2818.3282.08240forward
CNT30625935Solanum tuberosumDaucus carota21.059.2986.36132forward
CNT30483255Solanum tuberosumChara braunii21.5312.1483.7135forward
CNT30104901Solanum tuberosumOryza longistaminata26.7910.3884.52168forward
CNT30149356Solanum tuberosumBrachypodium distachyon379.9483.62232forward
CNT30116198Solanum tuberosumOryza nivara33.1715.7680.29208forward

Expression of CNT3096793

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVELLGHHDLNKLLIVDLSITINICFPNHLIDFFISKLLSKVSHHMTKLSS*

>peptide 2 (43 aa)
MRFRNSRKSIVPLPSASTSFIMSWSSASVGFCPNDHITVPSSLV

Sequence

>CNT3096793
AAAACACTTTGCGATGAGGAAATTACCCTCATAAAATTGCATTCATCAACTAAGAGGATCAAAGAAAGTACATAAACTTCAAGAAAATAAGTAGAGATTA
CACCACCCTTACAATAAAACATTACATTCAATGAAGGTTCAATACATCGAGATGGTAAGACTTACATTATACTAGATAAGATCCTATCCAATGAATTATT
TTTGGCTTTTTTTTCACATTTTTGACAAGTCTAAACTTCAAATGTAACAAGAGGATGGTGGAATTACTTGGCCATCATGACCTTAACAAACTCCTCATAG
TTGATTTGTCCATCACCATCAACATCTGCTTCCCTAATCATCTCATCGACTTCTTCATCAGTAAGCTTCTCTCCAAGGTTAGTCATCACATGACGAAGCT
CAGCAGCTGAGATGAAGCCATTTTGATCCTTGTCGAAAACTCTGAATGCCTCTTTCAACTCCTCCTCAGAGTCAGTATCCTTCATCTTCCTGGCCATGAG
GTTTAGAAACTCTAGGAAGTCGATAGTTCCATTACCATCTGCATCCACCTCGTTTATCATGTCCTGGAGCTCAGCTTCAGTAGGGTTCTGTCCCAACGAC
CACATCACAGTCCCAAGCTCCTTAGTC