Detailed information on CNT30576528


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 4e-54

BLAST vs NONCODE:
NONSLYT003545, E-value = 8e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672861Oryza barthiiSetaria viridis53.8160.6192.5360forward
CNT30387589Oryza barthiiTriticum turgidum50.3716.1988.72337forward
CNT3014113Oryza barthiiZea mays36.6252.4691.02245forward
CNT30204543Oryza barthiiHelianthus annuus32.4499.0981.11217forward
CNT30367748Oryza barthiiSorghum bicolor52.919192.09354forward
CNT30149356Oryza barthiiBrachypodium distachyon50.3714.4491.69337forward

Expression of CNT30576528

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RLQPFNSARNREVKMMIERNQAMHICTTIQEK*

>peptide 2 (71 aa)
MTWRSSAAEMKPFWSLSNTRKASLSSSSESVSFIFFAISINLVDHVLQLRLSWVLTKGPHHGSKLLSSDATC

>peptide 3 (63 aa)
KAATIQFSTQQGSKDDDRKEPGNAYLHNDPRKMMKPQQILCSGRRKISITIKRNQASDVVSHD*

Sequence

>CNT30576528
GAAGGCTGCAACCATTCAATTCAGCACGCAACAGGGAAGTAAAGATGATGATAGAAAGGAACCAGGCAATGCATATCTGCACAACGATCCAAGAAAAATG
ATGAAACCCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAGCATCACAATCAAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACTAGACCACCT
AACCCGATCCCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTTGTAGGCCCTGACAGTTTTAGTTCAC
TTCAGACAGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCGACGTCAGCCT
CACGGATCATCTCGTCAACTTCCTCGTCGGTCAGCTTCTCACCAAGGTTGGTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTCTGGTCCTT
GTCAAACACACGGAAGGCCTCCTTGAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCTTCGCCATCAGCATCAACCTCGTTGATCATGTCCTGCAGCTC
CGCCTCAGTTGGGTTCTGACCAAGGGACCGCATCACGGTTCCAAGCTCCTTAGTAGTGATGCAACCTGC