Detailed information on CNT30552330


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N725|ALFC3_ORYSJ, E-value = 4e-77

BLAST vs NONCODE:
NONORUT000701, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675100Oryza glaberrimaSetaria viridis20.4164.3591.89148forward
CNT30522989Oryza glaberrimaSetaria italica40.6931.7589.15295forward
CNT30641283Oryza glaberrimaNymphaea colorata44.5516.4984.83323forward
CNT30636619Oryza glaberrimaCapsicum annuum27.5925.6780.5200forward
CNT30437900Oryza glaberrimaAegilops tauschii14.3423.7489.42104forward
CNT30135152Oryza glaberrimaLolium perenne36.8341.290.26267forward
CNT3014358Oryza glaberrimaZea mays33.9342.7886.59246forward
CNT30364112Oryza glaberrimaSorghum bicolor40.9733.7589.56297forward
CNT30120586Oryza glaberrimaCitrus clementina1226.0586.2187forward
CNT3099714Oryza glaberrimaOryza rufipogon49.6640.5999.44360forward

Expression of CNT30552330

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MVFVEGLVAGSEDLLGDIGTALNVMRAIDKDLRLDNRHQPVLLADDGIASKTLSIQVN

Sequence

>CNT30552330
AAAAACACCGCGGGAACCGAGACACAGCAAAACGCCATATAGGTAAAAGGTTTAATTAACATAGGAGTACAGCAGAAAATAACAATAAAAAGATAGCATG
GAATTAAAGCCGCTGCTCCAATTTACCATACGCAGCATTTGATTACAGGAATACCAAAAAACTACTACCGATGACAGGTATTAATTATTAAAAAGCACAG
GTTCAGATTATTGCGACAAAAGTTTTTGATACCCGTAAGATTGGACGCTTGATAGCCAAACCACACTCAGAACCCTAAATATGCATACGGAGGATGTCCA
ATCGGATCTTCAGCCACCACCAGAGGCAGATCAGTACTTGTAGTCCTTGACGTGAAGGCTCTCAGAGGTTCACGGTCGCCTCCTCCTCGCTCTGTCCACC
AGAGAGGAAGACAATGGCAGGCACGGCAGCAGGGACAGTCCTCTGGAGGGCGCGGACGGTGTACTCGGCGATGAGCTGAGGGGAAACCTTCTTGGATTCA
GATCCTGGGGTGACCATGTTGGGCTTCAGGAGGGAACCCTCCAGGAGGACATGGTGTTCGTTGAGGGCCTTGTAGCAGGCAGCGAGGACCTTCTCGGTGA
CATAGGCACAGCGCTCAATGTCATGAGAGCCATCGACAAGGATCTCAGGCTCGACAATCGGCACCAGCCCGTTCTCCTGGCAGATGATGGCATAGCGAGC
AAGACCCTGAGCATTCAGGTCAATG