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Detailed information on CNT30579988


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Echinochloa crusgalliOryza sativa86.2930.9289.17277forward
CNT30670509Echinochloa crusgalliSetaria viridis55.1452.0692.66177forward
CNT30641283Echinochloa crusgalliNymphaea colorata41.126.7486.36132forward
CNT30222288Echinochloa crusgalliHordeum vulgare70.0953.1988.44225forward
CNT30564031Echinochloa crusgalliActinidia chinensis27.4113.0289.7788forward
CNT30437900Echinochloa crusgalliAegilops tauschii91.967.3588.47295forward
CNT304578Echinochloa crusgalliZea mays50.7829.5393.25163forward
CNT3066783Echinochloa crusgalliLeersia perrieri68.5467.4890220forward
CNT30720854Echinochloa crusgalliTriticum spelta56.726.893.41182forward
CNT30364112Echinochloa crusgalliSorghum bicolor78.528.6494.05252forward
CNT3099714Echinochloa crusgalliOryza rufipogon65.7323.7988.63211forward
CNT30557505Echinochloa crusgalliPanicum hallii20.257.4586.1565forward
CNT30113854Echinochloa crusgalliFicus carica42.0619.0485.19135forward

Expression of CNT30579988

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LSVPTTSMVPLSTLMPGRTPPSLRTSTKGLPSLVFW*

>peptide 2 (75 aa)
LVSANNLNGALVNLDAREDASLVEDIDEGLAILGLLVESLLKEDHTTEVREGTRAAEEELTEGTAVLLHILNIDA*

Sequence

>CNT30579988
CTTGTCAGTGCCAACAACCTCAATGGTGCCCTTGTCAACCTTGATGCCAGGGAGGACGCCTCCCTCGTTGAGGACATCGACGAAGGGCTTGCCATCCTTG
GTCTTCTGGTAGAGAGTCTCCTCAAAGAGGATCACACCACTGAGGTACGGGAGGGCACCAGGGCAGCAGAAGAGGAGCTCACGGAGGGCACGGCGGTTCT
CCTCCACATTCTCAACATTGATGCTTGAAAGGCGCTTGCCAATGGTGCCAGTGGACTCGTCGGCAGCAAGGATACCCTTGCCAGGGGTGCCAATGTAAGT
AGCATTCTTGATGAGCTCATC