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Detailed information on CNT30437900


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 2e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Aegilops tauschiiOryza sativa70.5534.4986.41309forward
CNT30670509Aegilops tauschiiSetaria viridis39.550.8892.49173forward
CNT30522989Aegilops tauschiiSetaria italica23.7411.1989.42104forward
CNT30641283Aegilops tauschiiNymphaea colorata46.1210.3184.16202forward
CNT30222288Aegilops tauschiiHordeum vulgare60.7362.8896.24266forward
CNT30552330Aegilops tauschiiOryza glaberrima23.7414.3489.42104forward
CNT30458863Aegilops tauschiiSaccharum spontaneum76.4823.9887.46335forward
CNT30135152Aegilops tauschiiLolium perenne23.7416.0593.27104forward
CNT3066783Aegilops tauschiiLeersia perrieri50.9168.491.03223forward
CNT30683148Aegilops tauschiiTriticum urartu46.838.0397.56205forward
CNT30720854Aegilops tauschiiTriticum spelta44.5228.7295.9195forward
CNT30364112Aegilops tauschiiSorghum bicolor54.3427.0589.5238forward
CNT3099714Aegilops tauschiiOryza rufipogon56.1627.7385.37246forward
CNT30579988Aegilops tauschiiEchinochloa crusgalli67.3591.988.47295forward

Expression of CNT30437900

Peptides detected in this lncRNA

>peptide 1 (54 aa)
LQEGALEEDMLVVEGLVAGSKDDLGDVSTAVNVMSPGWWSHRWFQQARWCPCPP*

>peptide 2 (91 aa)
MVPLSTLMPGRTLPALRMSTKGLPPLVLWYRVSSNRITPLRYWRAPGVQKRSSRRARRLSSTFSTLMLAKRLPMVPVDSSAARIPLPGVPM*

Sequence

>CNT30437900
CTTCAGGAGGGTGCCCTCGAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCGGTGACGTAAGCACAGCGGTCAATGTCA
TGAGCCCTGGGTGGTGGTCTCACCGTTGGTTCCAGCAAGCTCGATGGTGCCCTTGTCCACCTTGATGCCGGGGAGGACATTGCCCGCCTTGAGGATGTCG
ACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGGGTCTCCTCAAACAGGATCACACCGCTGAGGTACTGGAGGGCACCAGGGGTGCAGAAGAGGAGCT
CACGGAGGGCACGACGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCGAAGCGCTTGCCGATGGTGCCGGTGGACTCGTCAGCAGCAAGGATACCCTT
GCCAGGGGTGCCAATGTAGGCAGCGTTCTTGATGAGCT