Detailed information on CNT30348495


BLAST search results

BLAST vs Swiss-Prot:
sp|P36181|HSP80_SOLLC, E-value = 3e-60

BLAST vs NONCODE:
NONBNAT003938, E-value = 8e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Eragrostis tefOryza sativa72.1553.6289.77215forward
CNT30675624Eragrostis tefSetaria viridis84.2339.7895.62251forward
CNT30523385Eragrostis tefSetaria italica10039.1194.97298forward
CNT30512942Eragrostis tefJuglans regia70.1341.2283.25209forward
CNT3071729Eragrostis tefQuercus suber64.0968.2181.15191forward
CNT30402735Eragrostis tefBeta vulgaris80.5417.6284.58240forward
CNT30631099Eragrostis tefVigna unguiculata72.1534.6883.72215forward
CNT30712340Eragrostis tefGlycine max70.1336.3583.73209forward
CNT30158908Eragrostis tefPistacia vera46.988.5782.14140forward
CNT30190004Eragrostis tefSecale cereale25.511.7588.1676reverse complement
CNT30299505Eragrostis tefTriticum aestivum50.3413.7488150forward
CNT30566784Eragrostis tefActinidia chinensis71.1427.8982.08212forward
CNT30554909Eragrostis tefOryza glaberrima78.5260.7886.75234forward
CNT30145759Eragrostis tefMedicago truncatula68.1253.5680.79203forward
CNT3061941Eragrostis tefArabidopsis lyrata32.8937.6986.7398forward
CNT30613762Eragrostis tefArabis alpina56.0441.7585.03167forward
CNT30652959Eragrostis tefRosa chinensis62.0838.4686.49185forward
CNT30625276Eragrostis tefDaucus carota78.1916.5781.55233forward
CNT30366950Eragrostis tefSorghum bicolor83.2228.9791.53248forward
CNT30418103Eragrostis tefPapaver somniferum58.7244.8785.14175forward
CNT3022206Eragrostis tefPopulus trichocarpa68.1237.3284.24203forward
CNT30103468Eragrostis tefOryza rufipogon78.5244.7487.18234forward

Expression of CNT30348495

Peptides detected in this lncRNA

>peptide 1 (78 aa)
EVEDHLGTPAKGLSRCITCDGEGPTSLRLPHVLLIIVVLGGHNDLLSDKVGRVEPNTKLTDHRHISTSSQCLHELLCP*

Sequence

>CNT30348495
TGAGGTAGAGGACCATCTTGGTACCCCTGCCAAGGGACTCTCCAGATGTATCACGTGTGACGGTGAAGGACCCACCAGCCTGAGACTCCCACACGTACTG
CTCATCATCGTTGTGCTTGGTGGTCACAACGACCTTCTCAGCGACAAGGTAGGCAGAGTAGAACCCAACACCAAACTGACCGATCATAGACACATCAGCA
CCAGCAGCCAGTGCCTCCATGAACTCCTTTGTCCCTGACCGTGCAATGGTACCAAGGTTATTCACGAGGTCTGACTTGGTCATACCAATACCACTGTC