« Back to Papaver somniferum search


Detailed information on CNT30418103


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Papaver somniferumOryza sativa38.7237.6684.11151forward
CNT30675843Papaver somniferumSetaria viridis53.3349.4184.13208forward
CNT30523385Papaver somniferumSetaria italica53.3327.384.13208forward
CNT30512942Papaver somniferumJuglans regia71.0354.6483.75277forward
CNT3071729Papaver somniferumQuercus suber50.7770.7181.31198forward
CNT30402735Papaver somniferumBeta vulgaris54.115.4987.68211forward
CNT30631181Papaver somniferumVigna unguiculata51.5437.7887.06201forward
CNT30712364Papaver somniferumGlycine max70.5169.2790.55275forward
CNT30158908Papaver somniferumPistacia vera39.239.3686.27153forward
CNT3094731Papaver somniferumSolanum tuberosum53.5913.9289209forward
CNT30566784Papaver somniferumActinidia chinensis73.3337.6384.62286forward
CNT30554909Papaver somniferumOryza glaberrima43.5944.1683.53170forward
CNT30145759Papaver somniferumMedicago truncatula51.0352.5183.42199forward
CNT3061941Papaver somniferumArabidopsis lyrata23.5935.3891.392forward
CNT30613762Papaver somniferumArabis alpina71.5469.7587.1279forward
CNT30652959Papaver somniferumRosa chinensis51.0341.3790.95199forward
CNT30625276Papaver somniferumDaucus carota53.3314.7988.46208forward
CNT30348495Papaver somniferumEragrostis tef44.8758.7285.14175forward
CNT30366950Papaver somniferumSorghum bicolor42.0519.1684.15164forward
CNT30154320Papaver somniferumPrunus persica29.7431.4485.34116forward
CNT30704690Papaver somniferumPrunus avium56.1510.7888.58219forward
CNT3022206Papaver somniferumPopulus trichocarpa70.2650.3784.67274forward
CNT30103468Papaver somniferumOryza rufipogon43.5932.583.53170forward

Expression of CNT30418103

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MNSECFLTKSFNLRSSRTSPEVSLVTVKDPPAWDSQTYCSSSLCLVVTITLSATRYAE*

>peptide 2 (83 aa)
MLLDQILQSALLKNFTRGIPGNSERSSSLGFPDILLIIIVLGGNNNLVSYKVCRVETNTKLSNHTNISTSSQSFHEFFGSRPCN

>peptide 3 (39 aa)
FSFSSSTSSTFPSSSFFSSSSSSSEISFSVVFSVHKEIG*

>peptide 4 (41 aa)
PSPFLRQHPLPFPLHLSSPPHLHHLRFPSQWSSLSTKRLDS*

Sequence

>CNT30418103
CCTTCTCCTTTTCTTCGTCAACATCCTCTACCTTTCCCTCTTCATCTTTCTTCTCCTCCTCATCTTCATCATCTGAGATTTCCTTCTCAGTGGTCTTCTC
TGTCCACAAAGAGATTGGATAGCTGATGAACTCAGAATGCTTCTTGACCAAATCCTTCAATCTGCGCTCCTCAAGAACTTCACCAGAGGTATCCCTGGTA
ACAGTGAAAGATCCTCCAGCCTGGGATTCCCAGACATACTGCTCATCATCATTGTGCTTGGTGGTAACAATAACCTTGTCAGCTACAAGGTATGCAGAGT
AGAAACCAACACCAAACTGTCCAATCATACTAACATCAGCACCAGCAGCCAAAGCTTCCATGAATTCTTTGGTTCCAGACCTTGCAATGG