Detailed information on CNT30190004


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554909Secale cerealeOryza glaberrima12.5221.0485.1981reverse complement
CNT30667663Secale cerealeTriticum dicoccoides65.2252.9589.34422forward
CNT30348495Secale cerealeEragrostis tef11.7525.588.1676reverse complement
CNT30363115Secale cerealeSorghum bicolor10.222.386.3666reverse complement

Expression of CNT30190004

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MATADLRSVEAAAEAAAAADGGGDGGRRRDAVAAQRPAAGDELVGRRPRHLLHQGTPRCSPRYGHRCQAGCGCPRPHGRWLLHCHP*

>peptide 2 (82 aa)
MLSLPNVRRRATNSWAVVRDTFSTKARPDAPLAMGTDARQAVDAPDLMAGGSFTVTRDTSGEQLGRGTKMVLYLNDDQDKVVN

>peptide 3 (66 aa)
TTPLHTTRRRRPSHSLHSTASATSPSWPEIHSSSTLPLDSSPNPPSATPTGETPSPSMTSLPPSSD*

>peptide 4 (57 aa)
PLLSTRPAAADPATASTPPLAPPPLPGQRSTRAPPSLSIPLQTRRRQPPPVKPHHHR*

>peptide 5 (52 aa)
MLPSLWAPMPGRLWMPQTSWPVAPSLSPVIRLGSSSAGVPRWSSTSMTTRTR*

>peptide 6 (47 aa)
MGGDGEAWIRTRTHRSILLRWPSPPTNFTTAIFGHGDRGSPICRGCR*

Sequence

>CNT30190004
CACCACTCCTCTCCACACGACCCGCCGCCGCCGACCCAGCCACAGCCTCCACTCCACCGCTAGCGCCACCTCCCCTTCCTGGCCAGAGATCCACTCGAGC
TCCACCCTCCCTCTCGATTCCTCTCCAAACCCGCCGTCGGCAACCCCCACCGGTGAAACCCCATCACCATCGATGACCTCCCTCCCTCCCTCTTCAGATT
GACGGATGGGTGGGGACGGGGAGGCGTGGATCCGCACCCGCACCCACCGGAGCATCCTGCTGCGGTGGCCCTCGCCGCCGACGAACTTCACGACGGCCAT
CTTCGGCCATGGCGACCGCGGATCTCCGATCTGTAGAGGCTGCCGCTGAGGCTGCCGCTGCTGCTGACGGCGGTGGAGACGGTGGTCGTCGACGCGATGC
TGTCGCTGCCCAACGTCCGGCGGCGGGCGACGAACTCGTGGGCCGTCGTCCGCGACACCTTCTCCACCAAGGCACGCCCCGATGCTCCCCTCGCTATGGG
CACCGATGCCAGGCAGGCTGTGGATGCCCCAGACCTCATGGCCGGTGGCTCCTTCACTGTCACCCGTGATACGTCTGGGGAGCAGCTCGGCAGGGGTACC
AAGATGGTCCTCTACCTCAATGACGACCAGGACAAGGTAGTGAACCC