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Detailed information on CNT30554909


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69QQ6|HSP82_ORYSJ, E-value = 5e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Oryza glaberrimaOryza sativa55.0652.8791.04212forward
CNT30675843Oryza glaberrimaSetaria viridis58.753.6887.61226forward
CNT30523621Oryza glaberrimaSetaria italica62.3436.7588.33240forward
CNT30512942Oryza glaberrimaJuglans regia50.3938.2680.93194forward
CNT3019808Oryza glaberrimaCitrullus lanatus29.6117.0182.46114forward
CNT3071729Oryza glaberrimaQuercus suber54.2974.6481.34209forward
CNT30402735Oryza glaberrimaBeta vulgaris60.5217.1182.4233forward
CNT30631099Oryza glaberrimaVigna unguiculata50.6531.4585.13195forward
CNT30712340Oryza glaberrimaGlycine max52.4735.1381.19202forward
CNT30158908Oryza glaberrimaPistacia vera46.2310.8982.58178forward
CNT3094731Oryza glaberrimaSolanum tuberosum50.6512.9982.56195forward
CNT30190004Oryza glaberrimaSecale cereale21.0412.5285.1981reverse complement
CNT30299505Oryza glaberrimaTriticum aestivum4014.188.31154forward
CNT30566784Oryza glaberrimaActinidia chinensis44.9422.7681.5173forward
CNT30145759Oryza glaberrimaMedicago truncatula44.9445.6579.19173forward
CNT3061941Oryza glaberrimaArabidopsis lyrata24.6836.5483.1695forward
CNT30613762Oryza glaberrimaArabis alpina50.6548.7584.62195forward
CNT3012962Oryza glaberrimaZea mays32.4719.290.4125forward
CNT30652959Oryza glaberrimaRosa chinensis35.5828.4883.94137forward
CNT30625276Oryza glaberrimaDaucus carota52.7314.4481.28203forward
CNT30348495Oryza glaberrimaEragrostis tef60.7878.5286.75234forward
CNT30366950Oryza glaberrimaSorghum bicolor48.0521.6190.81185forward
CNT30418103Oryza glaberrimaPapaver somniferum44.1643.5983.53170forward
CNT30704690Oryza glaberrimaPrunus avium32.476.1584.8125forward
CNT3022206Oryza glaberrimaPopulus trichocarpa50.6535.8583.59195forward
CNT30103468Oryza glaberrimaOryza rufipogon98.4472.4799.47379forward

Expression of CNT30554909

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MPTPLSMIDRVLLALSGTMWMNSSGCASSLLLSVRLSNLILSN

>peptide 2 (62 aa)
MDTSAPAASASMNSLVRLGHADTTVDDRQGVASLVGDNVDEQLRLRIELALVREALEPNLIQC

>peptide 3 (91 aa)
LIILEVEGDLSTPSKLLTRGITCNSEGPTGLGLPHILLVVVVLGGHNNPLSNEVGGVEPDTKLPNHGHISTGSERLHELLGPTWSCRHHCR*

Sequence

>CNT30554909
CTGATCATCCTTGAGGTAGAGGGTGATCTTAGTACCCCGTCCAAGCTGCTCACCAGAGGTATCACGTGTAACAGTGAAGGACCCACCGGCCTGGGACTCC
CACACATACTGCTCGTCGTCGTTGTGCTTGGTGGTCACAACAACCCTCTCAGCAACGAGGTAGGCGGAGTAGAACCCGACACCAAACTGCCCAATCATGG
ACACATCAGCACCGGCAGCGAGCGCCTCCATGAACTCCTTGGTCCGACTTGGTCATGCCGACACCACTGTCGATGATCGACAGGGTGTTGCTAGCCTTGT
CGGGGACAATGTGGATGAACAGCTCCGGCTGCGCATCGAGCTTGCTCTTGTCCGTGAGGCTCTCGAACCTAATCTTATCCAATGC