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Detailed information on CNT3022206


BLAST search results

BLAST vs Swiss-Prot:
sp|P36181|HSP80_SOLLC, E-value = 1e-70

BLAST vs NONCODE:
NONMEST000006, E-value = 3e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Populus trichocarpaOryza sativa21.3228.9387.07116forward
CNT30675624Populus trichocarpaSetaria viridis38.0532.8184.06207forward
CNT30523385Populus trichocarpaSetaria italica42.8330.5883.69233forward
CNT30512942Populus trichocarpaJuglans regia68.5773.5786.06373forward
CNT30729348Populus trichocarpaCorchorus capsularis20.0412.0484.4109forward
CNT3071729Populus trichocarpaQuercus suber27.5753.5780.67150forward
CNT30402735Populus trichocarpaBeta vulgaris39.7115.8685.19216forward
CNT30526133Populus trichocarpaPhaseolus vulgaris15.2641.591.5783forward
CNT30631099Populus trichocarpaVigna unguiculata25.1822.188.32137forward
CNT30712364Populus trichocarpaGlycine max67.191.9486.58365forward
CNT30158908Populus trichocarpaPistacia vera31.4310.4782.46171forward
CNT3094731Populus trichocarpaSolanum tuberosum62.1322.5286.39338forward
CNT30566784Populus trichocarpaActinidia chinensis67.6548.4283.15368forward
CNT30554909Populus trichocarpaOryza glaberrima35.8550.6583.59195forward
CNT30145759Populus trichocarpaMedicago truncatula19.8528.587.96108forward
CNT3061941Populus trichocarpaArabidopsis lyrata18.238.0888.8999forward
CNT30613762Populus trichocarpaArabis alpina64.718885.8352forward
CNT30652959Populus trichocarpaRosa chinensis38.9744.0786.79212forward
CNT30204348Populus trichocarpaHelianthus annuus22.2438.0583.47121forward
CNT30625276Populus trichocarpaDaucus carota40.6215.7281.9221forward
CNT30688537Populus trichocarpaTriticum urartu10.6625.1191.3858forward
CNT30348495Populus trichocarpaEragrostis tef37.3268.1284.24203forward
CNT30366950Populus trichocarpaSorghum bicolor38.0524.1883.57207forward
CNT30154320Populus trichocarpaPrunus persica22.7933.687.1124forward
CNT30418103Populus trichocarpaPapaver somniferum63.0587.9583.67343forward
CNT30704690Populus trichocarpaPrunus avium70.418.8582.25383forward
CNT30103468Populus trichocarpaOryza rufipogon63.2465.7779.94344forward

Expression of CNT3022206

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MGFCLFTKDHSCEISLIFFFFFSSLSFSSSTSSTLPSSSFLSSSSFLSSSSSSSEISFSVVFSIQREIG*

>peptide 2 (29 aa)
VKCTILLFSDLLWFPHPDGLLLVHQRPLM*

Sequence

>CNT3022206
GTAAAATGCACCATACTCCTCTTTAGTGATCTCCTCTGGTTTCCTCATCCAGATGGGCTTCTGCTTGTTCACCAAAGACCACTCATGTGAAATTTCCTTG
ATCTTCTTCTTTTTCTTCTCTTCCTTGTCCTTCTCCTCATCAACATCCTCTACATTACCCTCCTCATCCTTCTTATCTTCCTCGTCCTTCTTATCTTCCT
CATCCTCATCATCAGAAATCTCCTTCTCAGTAGTCTTCTCAATCCAAAGGGAAATCGGATAGCTAATAAACTCAGAATGTTTCTTAATCAGATCCTTGAG
ACGACGCTCCTCAAGGTTCTCACCAGAGGTATCCCTGGTGACCGTGAATGAACCACCGGCCTGAGACTCCCACACATACTGCTCATCATCATTGTGTTTG
GTGGTGACAACCACCTTATCAGCAACCAAGTAAGCCGAGTAGAACCCGACACCAAACTGTCCAATCATACTAACATCAGCGCCAGCAGTAACAGCTTCCA
TGAACTCCTTGGTTCCAGACCTTGCAATGGTACCGAGGTTGTTC